Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00900 and A4249_RS00905 are separated by 148 nucleotides A4249_RS00905 and A4249_RS00910 overlap by 4 nucleotides A4249_RS00910 and A4249_RS00915 overlap by 4 nucleotides A4249_RS00915 and A4249_RS00920 overlap by 4 nucleotides
A4249_RS00900: A4249_RS00900 - fasciclin domain-containing protein, at 166,502 to 167,134
_RS00900
A4249_RS00905: A4249_RS00905 - DNA-deoxyinosine glycosylase, at 167,283 to 167,792
_RS00905
A4249_RS00910: A4249_RS00910 - 2OG-Fe(II) oxygenase family protein, at 167,789 to 168,517
_RS00910
A4249_RS00915: A4249_RS00915 - hypothetical protein, at 168,514 to 168,849
_RS00915
A4249_RS00920: A4249_RS00920 - adenylosuccinate lyase, at 168,846 to 170,147
_RS00920
Position (kb) 167
168
169 Strain fitness (log2 ratio) -2
-1
0
1
2 at 166.939 kb on + strand, within A4249_RS00900 at 166.940 kb on - strand, within A4249_RS00900 at 166.940 kb on - strand, within A4249_RS00900 at 167.114 kb on - strand at 167.114 kb on - strand at 167.114 kb on - strand at 167.114 kb on - strand at 167.284 kb on + strand at 167.284 kb on + strand at 167.285 kb on - strand at 167.285 kb on - strand at 167.285 kb on - strand at 167.674 kb on + strand, within A4249_RS00905 at 167.674 kb on + strand, within A4249_RS00905 at 167.674 kb on + strand, within A4249_RS00905 at 167.674 kb on + strand, within A4249_RS00905 at 167.674 kb on + strand, within A4249_RS00905 at 167.674 kb on + strand, within A4249_RS00905 at 167.674 kb on + strand, within A4249_RS00905 at 167.675 kb on - strand, within A4249_RS00905 at 167.675 kb on - strand, within A4249_RS00905 at 167.675 kb on - strand, within A4249_RS00905 at 167.675 kb on - strand, within A4249_RS00905 at 167.675 kb on - strand, within A4249_RS00905 at 167.675 kb on - strand, within A4249_RS00905 at 167.675 kb on - strand, within A4249_RS00905 at 167.675 kb on - strand, within A4249_RS00905 at 167.677 kb on + strand, within A4249_RS00905 at 167.677 kb on + strand, within A4249_RS00905 at 167.677 kb on + strand, within A4249_RS00905 at 167.678 kb on - strand, within A4249_RS00905 at 167.780 kb on + strand at 167.780 kb on + strand at 167.780 kb on + strand at 167.850 kb on + strand at 167.851 kb on - strand at 167.851 kb on - strand at 167.851 kb on - strand at 167.851 kb on - strand at 168.007 kb on + strand, within A4249_RS00910 at 168.007 kb on + strand, within A4249_RS00910 at 168.007 kb on + strand, within A4249_RS00910 at 168.007 kb on + strand, within A4249_RS00910 at 168.007 kb on + strand, within A4249_RS00910 at 168.007 kb on + strand, within A4249_RS00910 at 168.007 kb on + strand, within A4249_RS00910 at 168.007 kb on + strand, within A4249_RS00910 at 168.007 kb on + strand, within A4249_RS00910 at 168.008 kb on - strand, within A4249_RS00910 at 168.008 kb on - strand, within A4249_RS00910 at 168.008 kb on - strand, within A4249_RS00910 at 168.008 kb on - strand, within A4249_RS00910 at 168.008 kb on - strand, within A4249_RS00910 at 168.008 kb on - strand, within A4249_RS00910 at 168.008 kb on - strand, within A4249_RS00910 at 168.008 kb on - strand, within A4249_RS00910 at 168.008 kb on - strand, within A4249_RS00910 at 168.009 kb on + strand, within A4249_RS00910 at 168.009 kb on + strand, within A4249_RS00910 at 168.009 kb on + strand, within A4249_RS00910 at 168.009 kb on + strand, within A4249_RS00910 at 168.009 kb on + strand, within A4249_RS00910 at 168.009 kb on + strand, within A4249_RS00910 at 168.010 kb on - strand, within A4249_RS00910 at 168.010 kb on - strand, within A4249_RS00910 at 168.010 kb on - strand, within A4249_RS00910 at 168.010 kb on - strand, within A4249_RS00910 at 168.225 kb on + strand, within A4249_RS00910 at 168.234 kb on + strand, within A4249_RS00910 at 168.234 kb on + strand, within A4249_RS00910 at 168.234 kb on + strand, within A4249_RS00910 at 168.234 kb on + strand, within A4249_RS00910 at 168.234 kb on + strand, within A4249_RS00910 at 168.234 kb on + strand, within A4249_RS00910 at 168.235 kb on - strand, within A4249_RS00910 at 168.235 kb on - strand, within A4249_RS00910 at 168.235 kb on - strand, within A4249_RS00910 at 168.235 kb on - strand, within A4249_RS00910 at 168.235 kb on - strand, within A4249_RS00910 at 168.235 kb on - strand, within A4249_RS00910 at 168.235 kb on - strand, within A4249_RS00910 at 168.235 kb on - strand, within A4249_RS00910 at 168.235 kb on - strand, within A4249_RS00910 at 168.235 kb on - strand, within A4249_RS00910 at 168.235 kb on - strand, within A4249_RS00910 at 168.278 kb on + strand, within A4249_RS00910 at 168.278 kb on + strand, within A4249_RS00910 at 168.278 kb on + strand, within A4249_RS00910 at 168.278 kb on + strand, within A4249_RS00910 at 168.278 kb on + strand, within A4249_RS00910 at 168.279 kb on - strand, within A4249_RS00910 at 168.279 kb on - strand, within A4249_RS00910 at 168.279 kb on - strand, within A4249_RS00910 at 168.459 kb on + strand at 168.460 kb on - strand at 168.460 kb on - strand at 168.460 kb on - strand at 168.460 kb on - strand at 168.471 kb on + strand at 168.472 kb on - strand at 168.472 kb on - strand at 168.496 kb on + strand at 168.594 kb on + strand, within A4249_RS00915 at 168.595 kb on - strand, within A4249_RS00915 at 168.595 kb on - strand, within A4249_RS00915 at 168.595 kb on - strand, within A4249_RS00915 at 168.627 kb on + strand, within A4249_RS00915 at 168.627 kb on + strand, within A4249_RS00915 at 168.627 kb on + strand, within A4249_RS00915 at 168.627 kb on + strand, within A4249_RS00915 at 168.627 kb on + strand, within A4249_RS00915 at 168.627 kb on + strand, within A4249_RS00915 at 168.627 kb on + strand, within A4249_RS00915 at 168.628 kb on - strand, within A4249_RS00915 at 168.628 kb on - strand, within A4249_RS00915 at 168.628 kb on - strand, within A4249_RS00915 at 168.628 kb on - strand, within A4249_RS00915 at 168.628 kb on - strand, within A4249_RS00915 at 168.628 kb on - strand, within A4249_RS00915 at 168.628 kb on - strand, within A4249_RS00915 at 168.628 kb on - strand, within A4249_RS00915 at 168.628 kb on - strand, within A4249_RS00915 at 168.628 kb on - strand, within A4249_RS00915 at 168.768 kb on + strand, within A4249_RS00915 at 168.768 kb on + strand, within A4249_RS00915 at 168.769 kb on - strand, within A4249_RS00915 at 168.769 kb on - strand, within A4249_RS00915 at 168.769 kb on - strand, within A4249_RS00915 at 168.776 kb on + strand, within A4249_RS00915 at 168.776 kb on + strand, within A4249_RS00915 at 168.776 kb on + strand, within A4249_RS00915 at 168.776 kb on + strand, within A4249_RS00915 at 168.776 kb on + strand, within A4249_RS00915 at 168.776 kb on + strand, within A4249_RS00915 at 168.776 kb on + strand, within A4249_RS00915 at 168.776 kb on + strand, within A4249_RS00915 at 168.776 kb on + strand, within A4249_RS00915 at 168.776 kb on + strand, within A4249_RS00915 at 168.776 kb on + strand, within A4249_RS00915 at 168.776 kb on + strand, within A4249_RS00915 at 168.776 kb on + strand, within A4249_RS00915 at 168.777 kb on - strand, within A4249_RS00915 at 168.777 kb on - strand, within A4249_RS00915 at 168.777 kb on - strand, within A4249_RS00915 at 168.777 kb on - strand, within A4249_RS00915 at 168.777 kb on - strand, within A4249_RS00915 at 168.777 kb on - strand, within A4249_RS00915 at 168.777 kb on - strand, within A4249_RS00915 at 168.777 kb on - strand, within A4249_RS00915 at 168.777 kb on - strand, within A4249_RS00915 at 168.777 kb on - strand, within A4249_RS00915 at 168.777 kb on - strand, within A4249_RS00915 at 168.794 kb on + strand, within A4249_RS00915 at 168.794 kb on + strand, within A4249_RS00915 at 168.794 kb on + strand, within A4249_RS00915 at 168.794 kb on + strand, within A4249_RS00915 at 168.795 kb on - strand, within A4249_RS00915 at 168.795 kb on - strand, within A4249_RS00915 at 168.795 kb on - strand, within A4249_RS00915 at 168.795 kb on - strand, within A4249_RS00915
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 166,939 + A4249_RS00900 0.69 +0.4 166,940 - A4249_RS00900 0.69 +0.4 166,940 - A4249_RS00900 0.69 +0.4 167,114 - -0.4 167,114 - -0.1 167,114 - -1.7 167,114 - -0.7 167,284 + +0.8 167,284 + -0.6 167,285 - -0.5 167,285 - +0.3 167,285 - -0.5 167,674 + A4249_RS00905 0.77 -1.7 167,674 + A4249_RS00905 0.77 -0.0 167,674 + A4249_RS00905 0.77 -0.5 167,674 + A4249_RS00905 0.77 +2.0 167,674 + A4249_RS00905 0.77 +0.1 167,674 + A4249_RS00905 0.77 -0.5 167,674 + A4249_RS00905 0.77 -0.8 167,675 - A4249_RS00905 0.77 +0.2 167,675 - A4249_RS00905 0.77 -1.1 167,675 - A4249_RS00905 0.77 -0.2 167,675 - A4249_RS00905 0.77 -1.9 167,675 - A4249_RS00905 0.77 -0.2 167,675 - A4249_RS00905 0.77 -0.6 167,675 - A4249_RS00905 0.77 -0.8 167,675 - A4249_RS00905 0.77 -0.9 167,677 + A4249_RS00905 0.77 +0.5 167,677 + A4249_RS00905 0.77 +0.6 167,677 + A4249_RS00905 0.77 +0.2 167,678 - A4249_RS00905 0.77 +0.6 167,780 + -0.3 167,780 + -0.7 167,780 + +0.5 167,850 + -0.4 167,851 - +0.6 167,851 - -0.2 167,851 - +0.4 167,851 - +1.0 168,007 + A4249_RS00910 0.30 +0.2 168,007 + A4249_RS00910 0.30 -1.1 168,007 + A4249_RS00910 0.30 -1.5 168,007 + A4249_RS00910 0.30 -0.9 168,007 + A4249_RS00910 0.30 -0.6 168,007 + A4249_RS00910 0.30 +0.7 168,007 + A4249_RS00910 0.30 -0.5 168,007 + A4249_RS00910 0.30 +0.1 168,007 + A4249_RS00910 0.30 -0.8 168,008 - A4249_RS00910 0.30 -0.2 168,008 - A4249_RS00910 0.30 -0.7 168,008 - A4249_RS00910 0.30 -0.4 168,008 - A4249_RS00910 0.30 -1.1 168,008 - A4249_RS00910 0.30 -0.5 168,008 - A4249_RS00910 0.30 -0.3 168,008 - A4249_RS00910 0.30 -0.2 168,008 - A4249_RS00910 0.30 -0.1 168,008 - A4249_RS00910 0.30 -0.3 168,009 + A4249_RS00910 0.30 -0.2 168,009 + A4249_RS00910 0.30 -0.8 168,009 + A4249_RS00910 0.30 -0.8 168,009 + A4249_RS00910 0.30 +0.7 168,009 + A4249_RS00910 0.30 +0.3 168,009 + A4249_RS00910 0.30 -1.1 168,010 - A4249_RS00910 0.30 -2.0 168,010 - A4249_RS00910 0.30 -0.6 168,010 - A4249_RS00910 0.30 -0.2 168,010 - A4249_RS00910 0.30 -0.5 168,225 + A4249_RS00910 0.60 -0.3 168,234 + A4249_RS00910 0.61 -0.3 168,234 + A4249_RS00910 0.61 +0.1 168,234 + A4249_RS00910 0.61 -1.5 168,234 + A4249_RS00910 0.61 +0.2 168,234 + A4249_RS00910 0.61 -0.4 168,234 + A4249_RS00910 0.61 -0.5 168,235 - A4249_RS00910 0.61 -1.0 168,235 - A4249_RS00910 0.61 +0.8 168,235 - A4249_RS00910 0.61 -0.6 168,235 - A4249_RS00910 0.61 +0.2 168,235 - A4249_RS00910 0.61 +0.9 168,235 - A4249_RS00910 0.61 +0.4 168,235 - A4249_RS00910 0.61 +0.0 168,235 - A4249_RS00910 0.61 -0.1 168,235 - A4249_RS00910 0.61 -0.5 168,235 - A4249_RS00910 0.61 -0.0 168,235 - A4249_RS00910 0.61 -1.6 168,278 + A4249_RS00910 0.67 +0.7 168,278 + A4249_RS00910 0.67 -1.0 168,278 + A4249_RS00910 0.67 -1.8 168,278 + A4249_RS00910 0.67 -1.3 168,278 + A4249_RS00910 0.67 +0.5 168,279 - A4249_RS00910 0.67 -0.4 168,279 - A4249_RS00910 0.67 -0.4 168,279 - A4249_RS00910 0.67 -0.0 168,459 + -0.7 168,460 - -0.3 168,460 - +0.3 168,460 - -0.5 168,460 - +0.6 168,471 + +1.1 168,472 - -0.4 168,472 - +0.4 168,496 + -0.3 168,594 + A4249_RS00915 0.24 -0.9 168,595 - A4249_RS00915 0.24 -0.6 168,595 - A4249_RS00915 0.24 -0.7 168,595 - A4249_RS00915 0.24 -0.5 168,627 + A4249_RS00915 0.34 -0.4 168,627 + A4249_RS00915 0.34 -0.4 168,627 + A4249_RS00915 0.34 +0.4 168,627 + A4249_RS00915 0.34 +0.5 168,627 + A4249_RS00915 0.34 +0.1 168,627 + A4249_RS00915 0.34 +0.9 168,627 + A4249_RS00915 0.34 -0.2 168,628 - A4249_RS00915 0.34 -0.4 168,628 - A4249_RS00915 0.34 +0.5 168,628 - A4249_RS00915 0.34 -0.4 168,628 - A4249_RS00915 0.34 -1.0 168,628 - A4249_RS00915 0.34 +0.3 168,628 - A4249_RS00915 0.34 -0.0 168,628 - A4249_RS00915 0.34 -0.1 168,628 - A4249_RS00915 0.34 +0.6 168,628 - A4249_RS00915 0.34 +0.7 168,628 - A4249_RS00915 0.34 -0.7 168,768 + A4249_RS00915 0.76 -1.3 168,768 + A4249_RS00915 0.76 +1.7 168,769 - A4249_RS00915 0.76 +0.2 168,769 - A4249_RS00915 0.76 -0.1 168,769 - A4249_RS00915 0.76 -0.6 168,776 + A4249_RS00915 0.78 -1.9 168,776 + A4249_RS00915 0.78 +0.5 168,776 + A4249_RS00915 0.78 -0.1 168,776 + A4249_RS00915 0.78 -0.3 168,776 + A4249_RS00915 0.78 +0.2 168,776 + A4249_RS00915 0.78 -0.4 168,776 + A4249_RS00915 0.78 +1.1 168,776 + A4249_RS00915 0.78 -0.7 168,776 + A4249_RS00915 0.78 -0.2 168,776 + A4249_RS00915 0.78 -0.7 168,776 + A4249_RS00915 0.78 +0.2 168,776 + A4249_RS00915 0.78 -0.3 168,776 + A4249_RS00915 0.78 -1.7 168,777 - A4249_RS00915 0.78 +1.1 168,777 - A4249_RS00915 0.78 +0.1 168,777 - A4249_RS00915 0.78 -0.4 168,777 - A4249_RS00915 0.78 -0.7 168,777 - A4249_RS00915 0.78 +0.0 168,777 - A4249_RS00915 0.78 +0.3 168,777 - A4249_RS00915 0.78 -0.2 168,777 - A4249_RS00915 0.78 +0.6 168,777 - A4249_RS00915 0.78 -0.9 168,777 - A4249_RS00915 0.78 -0.4 168,777 - A4249_RS00915 0.78 +0.0 168,794 + A4249_RS00915 0.83 +1.9 168,794 + A4249_RS00915 0.83 -1.1 168,794 + A4249_RS00915 0.83 +0.4 168,794 + A4249_RS00915 0.83 -1.1 168,795 - A4249_RS00915 0.84 -1.8 168,795 - A4249_RS00915 0.84 +0.2 168,795 - A4249_RS00915 0.84 +0.8 168,795 - A4249_RS00915 0.84 +0.1
Or see this region's nucleotide sequence