Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00315 and A4249_RS00320 are separated by 77 nucleotides A4249_RS00320 and A4249_RS00325 overlap by 4 nucleotides A4249_RS00325 and A4249_RS00330 are separated by 22 nucleotides A4249_RS00330 and A4249_RS00335 are separated by 54 nucleotides
A4249_RS00315: A4249_RS00315 - NAD(P)-dependent alcohol dehydrogenase, at 53,590 to 54,651
_RS00315
A4249_RS00320: A4249_RS00320 - DUF72 domain-containing protein, at 54,729 to 55,478
_RS00320
A4249_RS00325: A4249_RS00325 - type II toxin-antitoxin system RelE/ParE family toxin, at 55,475 to 55,795
_RS00325
A4249_RS00330: A4249_RS00330 - type II toxin-antitoxin system ParD family antitoxin, at 55,818 to 56,057
_RS00330
A4249_RS00335: A4249_RS00335 - ATP-binding protein, at 56,112 to 57,683
_RS00335
Position (kb) 55
56 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 54.539 kb on + strand, within A4249_RS00315 at 54.539 kb on + strand, within A4249_RS00315 at 54.539 kb on + strand, within A4249_RS00315 at 54.539 kb on + strand, within A4249_RS00315 at 54.539 kb on + strand, within A4249_RS00315 at 54.540 kb on - strand, within A4249_RS00315 at 54.540 kb on - strand, within A4249_RS00315 at 54.540 kb on - strand, within A4249_RS00315 at 54.540 kb on - strand, within A4249_RS00315 at 54.540 kb on - strand, within A4249_RS00315 at 54.540 kb on - strand, within A4249_RS00315 at 54.540 kb on - strand, within A4249_RS00315 at 54.593 kb on + strand at 54.594 kb on - strand at 54.657 kb on + strand at 54.658 kb on - strand at 54.658 kb on - strand at 54.658 kb on - strand at 54.658 kb on - strand at 54.658 kb on - strand at 54.658 kb on - strand at 54.658 kb on - strand at 54.720 kb on + strand at 54.720 kb on + strand at 54.720 kb on + strand at 54.721 kb on - strand at 54.730 kb on + strand at 54.731 kb on - strand at 54.731 kb on - strand at 54.796 kb on + strand at 54.796 kb on + strand at 54.797 kb on - strand at 54.910 kb on + strand, within A4249_RS00320 at 54.910 kb on + strand, within A4249_RS00320 at 54.911 kb on - strand, within A4249_RS00320 at 54.973 kb on + strand, within A4249_RS00320 at 54.973 kb on + strand, within A4249_RS00320 at 54.973 kb on + strand, within A4249_RS00320 at 54.974 kb on - strand, within A4249_RS00320 at 54.974 kb on - strand, within A4249_RS00320 at 54.990 kb on + strand, within A4249_RS00320 at 54.991 kb on + strand, within A4249_RS00320 at 54.992 kb on - strand, within A4249_RS00320 at 54.992 kb on - strand, within A4249_RS00320 at 55.009 kb on + strand, within A4249_RS00320 at 55.009 kb on + strand, within A4249_RS00320 at 55.009 kb on + strand, within A4249_RS00320 at 55.010 kb on - strand, within A4249_RS00320 at 55.249 kb on + strand, within A4249_RS00320 at 55.322 kb on + strand, within A4249_RS00320 at 55.322 kb on + strand, within A4249_RS00320 at 55.323 kb on - strand, within A4249_RS00320 at 55.333 kb on + strand, within A4249_RS00320 at 55.333 kb on + strand, within A4249_RS00320 at 55.333 kb on + strand, within A4249_RS00320 at 55.334 kb on - strand, within A4249_RS00320 at 55.334 kb on - strand, within A4249_RS00320 at 55.334 kb on - strand, within A4249_RS00320 at 55.334 kb on - strand, within A4249_RS00320 at 55.334 kb on - strand, within A4249_RS00320 at 55.334 kb on - strand, within A4249_RS00320 at 55.334 kb on - strand, within A4249_RS00320 at 55.336 kb on + strand, within A4249_RS00320 at 55.336 kb on + strand, within A4249_RS00320 at 55.336 kb on + strand, within A4249_RS00320 at 55.336 kb on + strand, within A4249_RS00320 at 55.336 kb on + strand, within A4249_RS00320 at 55.336 kb on + strand, within A4249_RS00320 at 55.336 kb on + strand, within A4249_RS00320 at 55.336 kb on + strand, within A4249_RS00320 at 55.337 kb on - strand, within A4249_RS00320 at 55.337 kb on - strand, within A4249_RS00320 at 55.337 kb on - strand, within A4249_RS00320 at 55.337 kb on - strand, within A4249_RS00320 at 55.337 kb on - strand, within A4249_RS00320 at 55.337 kb on - strand, within A4249_RS00320 at 55.337 kb on - strand, within A4249_RS00320 at 55.337 kb on - strand, within A4249_RS00320 at 55.337 kb on - strand, within A4249_RS00320 at 55.337 kb on - strand, within A4249_RS00320 at 55.337 kb on - strand, within A4249_RS00320 at 55.378 kb on + strand, within A4249_RS00320 at 55.379 kb on - strand, within A4249_RS00320 at 55.379 kb on - strand, within A4249_RS00320 at 55.379 kb on - strand, within A4249_RS00320 at 55.379 kb on - strand, within A4249_RS00320 at 55.379 kb on - strand, within A4249_RS00320 at 55.414 kb on + strand at 55.414 kb on + strand at 55.414 kb on + strand at 55.414 kb on + strand at 55.414 kb on + strand at 55.414 kb on + strand at 55.415 kb on - strand at 55.415 kb on - strand at 55.415 kb on - strand at 55.415 kb on - strand at 55.534 kb on + strand, within A4249_RS00325 at 55.534 kb on + strand, within A4249_RS00325 at 55.578 kb on + strand, within A4249_RS00325 at 55.578 kb on + strand, within A4249_RS00325 at 55.578 kb on + strand, within A4249_RS00325 at 55.578 kb on + strand, within A4249_RS00325 at 55.579 kb on - strand, within A4249_RS00325 at 55.579 kb on - strand, within A4249_RS00325 at 55.579 kb on - strand, within A4249_RS00325 at 55.579 kb on - strand, within A4249_RS00325 at 55.579 kb on - strand, within A4249_RS00325 at 55.599 kb on + strand, within A4249_RS00325 at 55.599 kb on + strand, within A4249_RS00325 at 55.599 kb on + strand, within A4249_RS00325 at 55.599 kb on + strand, within A4249_RS00325 at 55.599 kb on + strand, within A4249_RS00325 at 55.599 kb on + strand, within A4249_RS00325 at 55.599 kb on + strand, within A4249_RS00325 at 55.599 kb on + strand, within A4249_RS00325 at 55.599 kb on + strand, within A4249_RS00325 at 55.600 kb on - strand, within A4249_RS00325 at 55.600 kb on - strand, within A4249_RS00325 at 55.600 kb on - strand, within A4249_RS00325 at 55.600 kb on - strand, within A4249_RS00325 at 55.600 kb on - strand, within A4249_RS00325 at 55.600 kb on - strand, within A4249_RS00325 at 55.600 kb on - strand, within A4249_RS00325 at 55.600 kb on - strand, within A4249_RS00325 at 55.656 kb on + strand, within A4249_RS00325 at 55.656 kb on + strand, within A4249_RS00325 at 55.657 kb on - strand, within A4249_RS00325 at 55.657 kb on - strand, within A4249_RS00325 at 55.657 kb on - strand, within A4249_RS00325 at 55.657 kb on - strand, within A4249_RS00325 at 55.698 kb on + strand, within A4249_RS00325 at 55.698 kb on + strand, within A4249_RS00325 at 55.699 kb on - strand, within A4249_RS00325 at 55.699 kb on - strand, within A4249_RS00325 at 55.699 kb on - strand, within A4249_RS00325 at 55.699 kb on - strand, within A4249_RS00325 at 55.699 kb on - strand, within A4249_RS00325 at 55.699 kb on - strand, within A4249_RS00325 at 55.819 kb on + strand at 55.819 kb on + strand at 55.820 kb on - strand at 55.828 kb on + strand at 55.828 kb on + strand at 55.828 kb on + strand at 55.828 kb on + strand at 55.828 kb on + strand at 55.829 kb on - strand at 56.133 kb on + strand at 56.134 kb on - strand at 56.134 kb on - strand at 56.134 kb on - strand at 56.134 kb on - strand at 56.134 kb on - strand at 56.784 kb on + strand, within A4249_RS00335 at 56.785 kb on - strand, within A4249_RS00335 at 56.785 kb on - strand, within A4249_RS00335 at 56.785 kb on - strand, within A4249_RS00335
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 54,539 + A4249_RS00315 0.89 +0.8 54,539 + A4249_RS00315 0.89 -1.2 54,539 + A4249_RS00315 0.89 +0.3 54,539 + A4249_RS00315 0.89 -1.1 54,539 + A4249_RS00315 0.89 -0.3 54,540 - A4249_RS00315 0.89 -0.2 54,540 - A4249_RS00315 0.89 -1.5 54,540 - A4249_RS00315 0.89 +0.5 54,540 - A4249_RS00315 0.89 -0.4 54,540 - A4249_RS00315 0.89 -0.0 54,540 - A4249_RS00315 0.89 -1.0 54,540 - A4249_RS00315 0.89 +0.3 54,593 + -0.3 54,594 - +0.9 54,657 + -0.9 54,658 - +1.2 54,658 - +0.5 54,658 - +0.3 54,658 - -0.1 54,658 - +0.7 54,658 - -0.6 54,658 - -0.5 54,720 + +0.6 54,720 + +1.4 54,720 + -1.1 54,721 - +1.1 54,730 + -0.5 54,731 - -0.1 54,731 - +1.1 54,796 + +0.0 54,796 + +0.5 54,797 - -0.1 54,910 + A4249_RS00320 0.24 -0.4 54,910 + A4249_RS00320 0.24 -0.2 54,911 - A4249_RS00320 0.24 +1.4 54,973 + A4249_RS00320 0.33 +0.1 54,973 + A4249_RS00320 0.33 -1.6 54,973 + A4249_RS00320 0.33 -0.3 54,974 - A4249_RS00320 0.33 -0.9 54,974 - A4249_RS00320 0.33 -0.1 54,990 + A4249_RS00320 0.35 +0.1 54,991 + A4249_RS00320 0.35 +0.5 54,992 - A4249_RS00320 0.35 -0.3 54,992 - A4249_RS00320 0.35 -0.8 55,009 + A4249_RS00320 0.37 +0.1 55,009 + A4249_RS00320 0.37 +1.7 55,009 + A4249_RS00320 0.37 +0.7 55,010 - A4249_RS00320 0.37 +0.7 55,249 + A4249_RS00320 0.69 -0.1 55,322 + A4249_RS00320 0.79 -0.6 55,322 + A4249_RS00320 0.79 -0.7 55,323 - A4249_RS00320 0.79 -0.9 55,333 + A4249_RS00320 0.81 +0.0 55,333 + A4249_RS00320 0.81 +0.3 55,333 + A4249_RS00320 0.81 -0.8 55,334 - A4249_RS00320 0.81 +0.9 55,334 - A4249_RS00320 0.81 +1.2 55,334 - A4249_RS00320 0.81 -0.3 55,334 - A4249_RS00320 0.81 +2.3 55,334 - A4249_RS00320 0.81 +0.9 55,334 - A4249_RS00320 0.81 +0.8 55,334 - A4249_RS00320 0.81 +0.2 55,336 + A4249_RS00320 0.81 -0.1 55,336 + A4249_RS00320 0.81 +0.1 55,336 + A4249_RS00320 0.81 +0.8 55,336 + A4249_RS00320 0.81 -0.6 55,336 + A4249_RS00320 0.81 +1.0 55,336 + A4249_RS00320 0.81 -0.1 55,336 + A4249_RS00320 0.81 -0.3 55,336 + A4249_RS00320 0.81 -0.4 55,337 - A4249_RS00320 0.81 +0.8 55,337 - A4249_RS00320 0.81 -0.2 55,337 - A4249_RS00320 0.81 -1.1 55,337 - A4249_RS00320 0.81 +3.1 55,337 - A4249_RS00320 0.81 -2.1 55,337 - A4249_RS00320 0.81 +0.3 55,337 - A4249_RS00320 0.81 +0.3 55,337 - A4249_RS00320 0.81 -1.4 55,337 - A4249_RS00320 0.81 -1.3 55,337 - A4249_RS00320 0.81 -0.1 55,337 - A4249_RS00320 0.81 -1.6 55,378 + A4249_RS00320 0.87 +1.4 55,379 - A4249_RS00320 0.87 -0.1 55,379 - A4249_RS00320 0.87 +0.7 55,379 - A4249_RS00320 0.87 +0.1 55,379 - A4249_RS00320 0.87 +0.7 55,379 - A4249_RS00320 0.87 +0.9 55,414 + +1.4 55,414 + +1.7 55,414 + +0.2 55,414 + -0.2 55,414 + -0.4 55,414 + +0.4 55,415 - -0.1 55,415 - -0.1 55,415 - -1.5 55,415 - +1.2 55,534 + A4249_RS00325 0.18 +0.7 55,534 + A4249_RS00325 0.18 +0.1 55,578 + A4249_RS00325 0.32 -1.1 55,578 + A4249_RS00325 0.32 -0.1 55,578 + A4249_RS00325 0.32 +0.8 55,578 + A4249_RS00325 0.32 +1.5 55,579 - A4249_RS00325 0.32 +0.3 55,579 - A4249_RS00325 0.32 -0.1 55,579 - A4249_RS00325 0.32 +0.4 55,579 - A4249_RS00325 0.32 -0.3 55,579 - A4249_RS00325 0.32 -0.3 55,599 + A4249_RS00325 0.39 +0.5 55,599 + A4249_RS00325 0.39 +1.1 55,599 + A4249_RS00325 0.39 +1.4 55,599 + A4249_RS00325 0.39 +0.4 55,599 + A4249_RS00325 0.39 +0.7 55,599 + A4249_RS00325 0.39 +0.1 55,599 + A4249_RS00325 0.39 +0.1 55,599 + A4249_RS00325 0.39 +1.6 55,599 + A4249_RS00325 0.39 +0.9 55,600 - A4249_RS00325 0.39 -0.3 55,600 - A4249_RS00325 0.39 -0.1 55,600 - A4249_RS00325 0.39 +0.2 55,600 - A4249_RS00325 0.39 +0.9 55,600 - A4249_RS00325 0.39 -0.6 55,600 - A4249_RS00325 0.39 -1.1 55,600 - A4249_RS00325 0.39 -0.1 55,600 - A4249_RS00325 0.39 +1.3 55,656 + A4249_RS00325 0.56 -0.8 55,656 + A4249_RS00325 0.56 -0.8 55,657 - A4249_RS00325 0.57 -0.7 55,657 - A4249_RS00325 0.57 -0.9 55,657 - A4249_RS00325 0.57 -0.0 55,657 - A4249_RS00325 0.57 +0.7 55,698 + A4249_RS00325 0.69 -1.0 55,698 + A4249_RS00325 0.69 -0.2 55,699 - A4249_RS00325 0.70 +0.5 55,699 - A4249_RS00325 0.70 -1.2 55,699 - A4249_RS00325 0.70 +0.2 55,699 - A4249_RS00325 0.70 +0.2 55,699 - A4249_RS00325 0.70 -0.5 55,699 - A4249_RS00325 0.70 -0.3 55,819 + +0.0 55,819 + -1.0 55,820 - +0.1 55,828 + +0.2 55,828 + +0.3 55,828 + +0.3 55,828 + +0.9 55,828 + -1.1 55,829 - +1.7 56,133 + -0.2 56,134 - -0.9 56,134 - -2.0 56,134 - -1.5 56,134 - +0.7 56,134 - -0.5 56,784 + A4249_RS00335 0.43 +0.8 56,785 - A4249_RS00335 0.43 +0.5 56,785 - A4249_RS00335 0.43 -1.0 56,785 - A4249_RS00335 0.43 -0.0
Or see this region's nucleotide sequence