Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00160 and A4249_RS00165 overlap by 1 nucleotides A4249_RS00165 and A4249_RS00170 are separated by 103 nucleotides A4249_RS00170 and A4249_RS00175 are separated by 100 nucleotides A4249_RS00175 and A4249_RS00180 are separated by 239 nucleotides A4249_RS00180 and A4249_RS00185 are separated by 4 nucleotides
A4249_RS00160: A4249_RS00160 - NADP-dependent oxidoreductase, at 26,837 to 27,841
_RS00160
A4249_RS00165: A4249_RS00165 - SDR family oxidoreductase, at 27,841 to 28,629
_RS00165
A4249_RS00170: A4249_RS00170 - TetR/AcrR family transcriptional regulator, at 28,733 to 29,302
_RS00170
A4249_RS00175: A4249_RS00175 - cold-shock protein, at 29,403 to 29,615
_RS00175
A4249_RS00180: A4249_RS00180 - hypothetical protein, at 29,855 to 30,064
_RS00180
A4249_RS00185: A4249_RS00185 - SulP family inorganic anion transporter, at 30,069 to 31,553
_RS00185
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 27.816 kb on + strand at 27.817 kb on - strand at 27.857 kb on + strand at 27.857 kb on + strand at 27.857 kb on + strand at 27.857 kb on + strand at 27.857 kb on + strand at 27.858 kb on - strand at 27.858 kb on - strand at 27.858 kb on - strand at 27.858 kb on - strand at 27.858 kb on - strand at 27.858 kb on - strand at 27.858 kb on - strand at 27.858 kb on - strand at 27.858 kb on - strand at 27.858 kb on - strand at 28.087 kb on + strand, within A4249_RS00165 at 28.087 kb on + strand, within A4249_RS00165 at 28.088 kb on - strand, within A4249_RS00165 at 28.101 kb on - strand, within A4249_RS00165 at 28.101 kb on - strand, within A4249_RS00165 at 28.101 kb on - strand, within A4249_RS00165 at 28.101 kb on - strand, within A4249_RS00165 at 28.101 kb on - strand, within A4249_RS00165 at 28.145 kb on + strand, within A4249_RS00165 at 28.146 kb on - strand, within A4249_RS00165 at 28.172 kb on + strand, within A4249_RS00165 at 28.172 kb on + strand, within A4249_RS00165 at 28.173 kb on - strand, within A4249_RS00165 at 28.173 kb on - strand, within A4249_RS00165 at 28.290 kb on + strand, within A4249_RS00165 at 28.290 kb on + strand, within A4249_RS00165 at 28.290 kb on + strand, within A4249_RS00165 at 28.291 kb on - strand, within A4249_RS00165 at 28.571 kb on + strand at 28.571 kb on + strand at 28.571 kb on + strand at 28.571 kb on + strand at 28.571 kb on + strand at 28.571 kb on + strand at 28.571 kb on + strand at 28.571 kb on + strand at 28.571 kb on + strand at 28.571 kb on + strand at 28.572 kb on - strand at 28.572 kb on - strand at 28.988 kb on + strand, within A4249_RS00170 at 28.988 kb on + strand, within A4249_RS00170 at 28.988 kb on + strand, within A4249_RS00170 at 28.989 kb on - strand, within A4249_RS00170 at 28.989 kb on - strand, within A4249_RS00170 at 29.467 kb on + strand, within A4249_RS00175 at 29.741 kb on + strand at 29.741 kb on + strand at 29.741 kb on + strand at 29.741 kb on + strand at 29.741 kb on + strand at 29.742 kb on - strand at 29.742 kb on - strand at 29.742 kb on - strand at 29.753 kb on + strand at 29.754 kb on - strand at 29.886 kb on - strand, within A4249_RS00180 at 29.955 kb on - strand, within A4249_RS00180 at 30.134 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 27,816 + +0.1 27,817 - -1.8 27,857 + +1.1 27,857 + -0.6 27,857 + +2.0 27,857 + -0.3 27,857 + +0.2 27,858 - -0.1 27,858 - +0.7 27,858 - +0.0 27,858 - +0.3 27,858 - -0.4 27,858 - -0.1 27,858 - -0.5 27,858 - -0.8 27,858 - -0.5 27,858 - +0.1 28,087 + A4249_RS00165 0.31 -0.5 28,087 + A4249_RS00165 0.31 +0.1 28,088 - A4249_RS00165 0.31 +0.0 28,101 - A4249_RS00165 0.33 +0.2 28,101 - A4249_RS00165 0.33 +0.3 28,101 - A4249_RS00165 0.33 -0.8 28,101 - A4249_RS00165 0.33 +1.5 28,101 - A4249_RS00165 0.33 -0.9 28,145 + A4249_RS00165 0.39 +0.7 28,146 - A4249_RS00165 0.39 +1.0 28,172 + A4249_RS00165 0.42 +1.9 28,172 + A4249_RS00165 0.42 -1.3 28,173 - A4249_RS00165 0.42 +1.0 28,173 - A4249_RS00165 0.42 -0.1 28,290 + A4249_RS00165 0.57 -1.4 28,290 + A4249_RS00165 0.57 +0.0 28,290 + A4249_RS00165 0.57 -0.3 28,291 - A4249_RS00165 0.57 -0.3 28,571 + -0.6 28,571 + +1.6 28,571 + -1.2 28,571 + -0.1 28,571 + -0.3 28,571 + +0.2 28,571 + +0.1 28,571 + -1.7 28,571 + -0.2 28,571 + -0.6 28,572 - -0.3 28,572 - -0.4 28,988 + A4249_RS00170 0.45 +0.3 28,988 + A4249_RS00170 0.45 +0.4 28,988 + A4249_RS00170 0.45 +0.7 28,989 - A4249_RS00170 0.45 +0.1 28,989 - A4249_RS00170 0.45 +0.5 29,467 + A4249_RS00175 0.30 -0.1 29,741 + -1.0 29,741 + -0.7 29,741 + -0.3 29,741 + +0.7 29,741 + -0.3 29,742 - -1.0 29,742 - -0.4 29,742 - +0.7 29,753 + -0.9 29,754 - -0.2 29,886 - A4249_RS00180 0.15 +0.2 29,955 - A4249_RS00180 0.48 +0.1 30,134 + +0.0
Or see this region's nucleotide sequence