Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00095 and A4249_RS00100 overlap by 4 nucleotides A4249_RS00100 and A4249_RS00105 are separated by 260 nucleotides A4249_RS00105 and A4249_RS00110 are separated by 17 nucleotides
A4249_RS00095: A4249_RS00095 - DUF1700 domain-containing protein, at 15,948 to 16,547
_RS00095
A4249_RS00100: A4249_RS00100 - PadR family transcriptional regulator, at 16,544 to 16,888
_RS00100
A4249_RS00105: A4249_RS00105 - cytochrome c oxidase subunit II, at 17,149 to 18,135
_RS00105
A4249_RS00110: A4249_RS00110 - cytochrome c oxidase subunit I, at 18,153 to 19,835
_RS00110
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 16.666 kb on - strand, within A4249_RS00100 at 16.702 kb on - strand, within A4249_RS00100 at 16.702 kb on - strand, within A4249_RS00100 at 16.702 kb on - strand, within A4249_RS00100 at 16.702 kb on - strand, within A4249_RS00100 at 16.801 kb on - strand, within A4249_RS00100 at 16.801 kb on - strand, within A4249_RS00100 at 16.869 kb on - strand at 16.869 kb on - strand at 16.869 kb on - strand at 16.869 kb on - strand at 16.869 kb on - strand at 16.869 kb on - strand at 16.869 kb on - strand at 16.969 kb on + strand at 17.043 kb on - strand at 17.127 kb on + strand at 17.127 kb on + strand at 17.127 kb on + strand at 17.127 kb on + strand at 17.142 kb on + strand at 17.143 kb on - strand at 17.416 kb on + strand, within A4249_RS00105 at 17.417 kb on - strand, within A4249_RS00105 at 17.545 kb on + strand, within A4249_RS00105 at 17.545 kb on + strand, within A4249_RS00105 at 17.546 kb on - strand, within A4249_RS00105 at 17.546 kb on - strand, within A4249_RS00105 at 17.608 kb on + strand, within A4249_RS00105 at 17.608 kb on + strand, within A4249_RS00105 at 17.608 kb on + strand, within A4249_RS00105 at 17.608 kb on + strand, within A4249_RS00105 at 17.608 kb on + strand, within A4249_RS00105 at 17.609 kb on - strand, within A4249_RS00105 at 17.609 kb on - strand, within A4249_RS00105 at 17.609 kb on - strand, within A4249_RS00105 at 17.609 kb on - strand, within A4249_RS00105 at 17.609 kb on - strand, within A4249_RS00105 at 17.609 kb on - strand, within A4249_RS00105 at 17.609 kb on - strand, within A4249_RS00105 at 17.638 kb on + strand, within A4249_RS00105 at 17.638 kb on + strand, within A4249_RS00105 at 17.638 kb on + strand, within A4249_RS00105 at 17.638 kb on + strand, within A4249_RS00105 at 17.638 kb on + strand, within A4249_RS00105 at 17.638 kb on + strand, within A4249_RS00105 at 17.638 kb on + strand, within A4249_RS00105 at 17.639 kb on - strand, within A4249_RS00105 at 17.639 kb on - strand, within A4249_RS00105 at 17.639 kb on - strand, within A4249_RS00105 at 17.639 kb on - strand, within A4249_RS00105 at 17.639 kb on - strand, within A4249_RS00105 at 17.640 kb on + strand, within A4249_RS00105 at 17.640 kb on + strand, within A4249_RS00105 at 17.640 kb on + strand, within A4249_RS00105 at 17.641 kb on - strand, within A4249_RS00105 at 17.641 kb on - strand, within A4249_RS00105 at 17.689 kb on + strand, within A4249_RS00105 at 17.866 kb on + strand, within A4249_RS00105 at 17.866 kb on + strand, within A4249_RS00105 at 17.866 kb on + strand, within A4249_RS00105 at 17.867 kb on - strand, within A4249_RS00105 at 17.867 kb on - strand, within A4249_RS00105 at 17.867 kb on - strand, within A4249_RS00105 at 18.133 kb on + strand at 18.134 kb on - strand at 18.134 kb on - strand at 18.164 kb on + strand at 18.285 kb on + strand at 18.285 kb on + strand at 18.285 kb on + strand at 18.285 kb on + strand at 18.286 kb on - strand at 18.286 kb on - strand at 18.286 kb on - strand at 18.432 kb on + strand, within A4249_RS00110 at 18.432 kb on + strand, within A4249_RS00110 at 18.432 kb on + strand, within A4249_RS00110 at 18.432 kb on + strand, within A4249_RS00110 at 18.433 kb on - strand, within A4249_RS00110 at 18.433 kb on - strand, within A4249_RS00110 at 18.433 kb on - strand, within A4249_RS00110 at 18.433 kb on - strand, within A4249_RS00110 at 18.433 kb on - strand, within A4249_RS00110 at 18.433 kb on - strand, within A4249_RS00110 at 18.434 kb on + strand, within A4249_RS00110 at 18.434 kb on + strand, within A4249_RS00110 at 18.435 kb on - strand, within A4249_RS00110 at 18.435 kb on - strand, within A4249_RS00110 at 18.972 kb on + strand, within A4249_RS00110 at 18.972 kb on + strand, within A4249_RS00110 at 18.972 kb on + strand, within A4249_RS00110 at 18.972 kb on + strand, within A4249_RS00110 at 18.973 kb on - strand, within A4249_RS00110 at 18.973 kb on - strand, within A4249_RS00110 at 18.973 kb on - strand, within A4249_RS00110 at 19.011 kb on + strand, within A4249_RS00110 at 19.011 kb on + strand, within A4249_RS00110 at 19.011 kb on + strand, within A4249_RS00110 at 19.011 kb on + strand, within A4249_RS00110 at 19.011 kb on + strand, within A4249_RS00110 at 19.011 kb on + strand, within A4249_RS00110 at 19.011 kb on + strand, within A4249_RS00110 at 19.011 kb on + strand, within A4249_RS00110 at 19.011 kb on + strand, within A4249_RS00110 at 19.011 kb on + strand, within A4249_RS00110 at 19.012 kb on - strand, within A4249_RS00110 at 19.012 kb on - strand, within A4249_RS00110 at 19.012 kb on - strand, within A4249_RS00110 at 19.012 kb on - strand, within A4249_RS00110 at 19.012 kb on - strand, within A4249_RS00110 at 19.012 kb on - strand, within A4249_RS00110 at 19.012 kb on - strand, within A4249_RS00110 at 19.012 kb on - strand, within A4249_RS00110 at 19.012 kb on - strand, within A4249_RS00110 at 19.012 kb on - strand, within A4249_RS00110 at 19.012 kb on - strand, within A4249_RS00110 at 19.086 kb on + strand, within A4249_RS00110 at 19.101 kb on + strand, within A4249_RS00110 at 19.101 kb on + strand, within A4249_RS00110 at 19.101 kb on + strand, within A4249_RS00110 at 19.102 kb on - strand, within A4249_RS00110 at 19.102 kb on - strand, within A4249_RS00110 at 19.102 kb on - strand, within A4249_RS00110 at 19.102 kb on - strand, within A4249_RS00110 at 19.102 kb on - strand, within A4249_RS00110
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 16,666 - A4249_RS00100 0.35 +1.1 16,702 - A4249_RS00100 0.46 +1.1 16,702 - A4249_RS00100 0.46 -0.1 16,702 - A4249_RS00100 0.46 -0.1 16,702 - A4249_RS00100 0.46 -0.2 16,801 - A4249_RS00100 0.74 +1.5 16,801 - A4249_RS00100 0.74 -0.7 16,869 - -0.7 16,869 - +0.1 16,869 - -0.9 16,869 - -2.3 16,869 - -0.1 16,869 - -0.4 16,869 - -0.2 16,969 + -0.5 17,043 - -1.2 17,127 + -0.1 17,127 + -1.1 17,127 + +0.2 17,127 + -0.6 17,142 + -0.9 17,143 - +0.7 17,416 + A4249_RS00105 0.27 -0.9 17,417 - A4249_RS00105 0.27 -1.2 17,545 + A4249_RS00105 0.40 +0.2 17,545 + A4249_RS00105 0.40 -0.4 17,546 - A4249_RS00105 0.40 -1.2 17,546 - A4249_RS00105 0.40 +0.1 17,608 + A4249_RS00105 0.47 -0.7 17,608 + A4249_RS00105 0.47 -0.9 17,608 + A4249_RS00105 0.47 +0.3 17,608 + A4249_RS00105 0.47 -0.6 17,608 + A4249_RS00105 0.47 -0.6 17,609 - A4249_RS00105 0.47 -1.5 17,609 - A4249_RS00105 0.47 -0.8 17,609 - A4249_RS00105 0.47 -0.3 17,609 - A4249_RS00105 0.47 -0.3 17,609 - A4249_RS00105 0.47 -1.5 17,609 - A4249_RS00105 0.47 -0.9 17,609 - A4249_RS00105 0.47 +1.0 17,638 + A4249_RS00105 0.50 -0.3 17,638 + A4249_RS00105 0.50 +0.1 17,638 + A4249_RS00105 0.50 -0.6 17,638 + A4249_RS00105 0.50 -0.7 17,638 + A4249_RS00105 0.50 +0.8 17,638 + A4249_RS00105 0.50 -0.9 17,638 + A4249_RS00105 0.50 -0.8 17,639 - A4249_RS00105 0.50 -1.1 17,639 - A4249_RS00105 0.50 +1.3 17,639 - A4249_RS00105 0.50 -1.1 17,639 - A4249_RS00105 0.50 +0.8 17,639 - A4249_RS00105 0.50 +0.1 17,640 + A4249_RS00105 0.50 -0.6 17,640 + A4249_RS00105 0.50 -3.4 17,640 + A4249_RS00105 0.50 +0.8 17,641 - A4249_RS00105 0.50 -0.5 17,641 - A4249_RS00105 0.50 -1.7 17,689 + A4249_RS00105 0.55 -1.6 17,866 + A4249_RS00105 0.73 -0.2 17,866 + A4249_RS00105 0.73 -0.8 17,866 + A4249_RS00105 0.73 -0.4 17,867 - A4249_RS00105 0.73 +0.6 17,867 - A4249_RS00105 0.73 -1.1 17,867 - A4249_RS00105 0.73 -2.3 18,133 + -0.1 18,134 - -0.2 18,134 - -1.0 18,164 + -1.5 18,285 + -1.3 18,285 + -0.2 18,285 + -0.5 18,285 + -1.6 18,286 - +0.2 18,286 - -0.7 18,286 - -1.8 18,432 + A4249_RS00110 0.17 +0.9 18,432 + A4249_RS00110 0.17 -0.2 18,432 + A4249_RS00110 0.17 +0.1 18,432 + A4249_RS00110 0.17 +0.2 18,433 - A4249_RS00110 0.17 +0.5 18,433 - A4249_RS00110 0.17 -0.5 18,433 - A4249_RS00110 0.17 -0.6 18,433 - A4249_RS00110 0.17 -0.5 18,433 - A4249_RS00110 0.17 -0.8 18,433 - A4249_RS00110 0.17 +0.3 18,434 + A4249_RS00110 0.17 -0.4 18,434 + A4249_RS00110 0.17 +0.1 18,435 - A4249_RS00110 0.17 -0.4 18,435 - A4249_RS00110 0.17 +0.7 18,972 + A4249_RS00110 0.49 -1.3 18,972 + A4249_RS00110 0.49 -0.9 18,972 + A4249_RS00110 0.49 +1.6 18,972 + A4249_RS00110 0.49 +1.2 18,973 - A4249_RS00110 0.49 +1.2 18,973 - A4249_RS00110 0.49 -0.4 18,973 - A4249_RS00110 0.49 -1.2 19,011 + A4249_RS00110 0.51 +1.4 19,011 + A4249_RS00110 0.51 +1.1 19,011 + A4249_RS00110 0.51 -0.7 19,011 + A4249_RS00110 0.51 +0.2 19,011 + A4249_RS00110 0.51 -0.5 19,011 + A4249_RS00110 0.51 +0.9 19,011 + A4249_RS00110 0.51 -0.3 19,011 + A4249_RS00110 0.51 -0.6 19,011 + A4249_RS00110 0.51 +1.9 19,011 + A4249_RS00110 0.51 +2.1 19,012 - A4249_RS00110 0.51 +1.5 19,012 - A4249_RS00110 0.51 +0.5 19,012 - A4249_RS00110 0.51 +0.1 19,012 - A4249_RS00110 0.51 -1.4 19,012 - A4249_RS00110 0.51 +0.1 19,012 - A4249_RS00110 0.51 -1.6 19,012 - A4249_RS00110 0.51 -0.6 19,012 - A4249_RS00110 0.51 -0.5 19,012 - A4249_RS00110 0.51 +0.5 19,012 - A4249_RS00110 0.51 +0.4 19,012 - A4249_RS00110 0.51 -0.4 19,086 + A4249_RS00110 0.55 +1.2 19,101 + A4249_RS00110 0.56 -1.0 19,101 + A4249_RS00110 0.56 -0.6 19,101 + A4249_RS00110 0.56 +0.1 19,102 - A4249_RS00110 0.56 +0.6 19,102 - A4249_RS00110 0.56 +0.7 19,102 - A4249_RS00110 0.56 -0.9 19,102 - A4249_RS00110 0.56 -1.1 19,102 - A4249_RS00110 0.56 -0.9
Or see this region's nucleotide sequence