Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00085 and A4249_RS00090 are separated by 119 nucleotides A4249_RS00090 and A4249_RS00095 overlap by 4 nucleotides A4249_RS00095 and A4249_RS00100 overlap by 4 nucleotides A4249_RS00100 and A4249_RS00105 are separated by 260 nucleotides
A4249_RS00085: A4249_RS00085 - UbiA family prenyltransferase, at 14,018 to 15,049
_RS00085
A4249_RS00090: A4249_RS00090 - DUF2807 domain-containing protein, at 15,169 to 15,951
_RS00090
A4249_RS00095: A4249_RS00095 - DUF1700 domain-containing protein, at 15,948 to 16,547
_RS00095
A4249_RS00100: A4249_RS00100 - PadR family transcriptional regulator, at 16,544 to 16,888
_RS00100
A4249_RS00105: A4249_RS00105 - cytochrome c oxidase subunit II, at 17,149 to 18,135
_RS00105
Position (kb) 15
16
17 Strain fitness (log2 ratio) -2
-1
0
1 at 15.061 kb on - strand at 15.061 kb on - strand at 15.061 kb on - strand at 15.061 kb on - strand at 15.179 kb on + strand at 15.179 kb on + strand at 15.179 kb on + strand at 15.179 kb on + strand at 15.179 kb on + strand at 15.179 kb on + strand at 15.179 kb on + strand at 15.180 kb on - strand at 15.180 kb on - strand at 15.180 kb on - strand at 15.180 kb on - strand at 15.456 kb on - strand, within A4249_RS00090 at 15.692 kb on + strand, within A4249_RS00090 at 15.692 kb on + strand, within A4249_RS00090 at 15.692 kb on + strand, within A4249_RS00090 at 15.692 kb on + strand, within A4249_RS00090 at 15.692 kb on + strand, within A4249_RS00090 at 15.692 kb on + strand, within A4249_RS00090 at 15.692 kb on + strand, within A4249_RS00090 at 15.692 kb on + strand, within A4249_RS00090 at 15.692 kb on + strand, within A4249_RS00090 at 15.692 kb on + strand, within A4249_RS00090 at 15.692 kb on + strand, within A4249_RS00090 at 15.693 kb on - strand, within A4249_RS00090 at 15.693 kb on - strand, within A4249_RS00090 at 15.693 kb on - strand, within A4249_RS00090 at 15.693 kb on - strand, within A4249_RS00090 at 16.018 kb on + strand, within A4249_RS00095 at 16.666 kb on - strand, within A4249_RS00100 at 16.702 kb on - strand, within A4249_RS00100 at 16.702 kb on - strand, within A4249_RS00100 at 16.702 kb on - strand, within A4249_RS00100 at 16.702 kb on - strand, within A4249_RS00100 at 16.801 kb on - strand, within A4249_RS00100 at 16.801 kb on - strand, within A4249_RS00100 at 16.869 kb on - strand at 16.869 kb on - strand at 16.869 kb on - strand at 16.869 kb on - strand at 16.869 kb on - strand at 16.869 kb on - strand at 16.869 kb on - strand at 16.969 kb on + strand at 17.043 kb on - strand at 17.127 kb on + strand at 17.127 kb on + strand at 17.127 kb on + strand at 17.127 kb on + strand at 17.142 kb on + strand at 17.143 kb on - strand at 17.416 kb on + strand, within A4249_RS00105 at 17.417 kb on - strand, within A4249_RS00105 at 17.545 kb on + strand, within A4249_RS00105 at 17.545 kb on + strand, within A4249_RS00105 at 17.546 kb on - strand, within A4249_RS00105 at 17.546 kb on - strand, within A4249_RS00105
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 15,061 - -0.8 15,061 - +0.9 15,061 - +0.7 15,061 - +0.3 15,179 + +0.7 15,179 + -0.2 15,179 + -0.1 15,179 + +0.8 15,179 + +0.5 15,179 + -0.1 15,179 + -0.4 15,180 - -1.1 15,180 - -0.0 15,180 - +0.5 15,180 - -0.2 15,456 - A4249_RS00090 0.37 -0.6 15,692 + A4249_RS00090 0.67 +0.1 15,692 + A4249_RS00090 0.67 +0.1 15,692 + A4249_RS00090 0.67 -0.5 15,692 + A4249_RS00090 0.67 -0.4 15,692 + A4249_RS00090 0.67 +0.8 15,692 + A4249_RS00090 0.67 +0.5 15,692 + A4249_RS00090 0.67 -0.2 15,692 + A4249_RS00090 0.67 +0.3 15,692 + A4249_RS00090 0.67 +1.2 15,692 + A4249_RS00090 0.67 -0.1 15,692 + A4249_RS00090 0.67 +0.1 15,693 - A4249_RS00090 0.67 +1.5 15,693 - A4249_RS00090 0.67 -1.3 15,693 - A4249_RS00090 0.67 -1.0 15,693 - A4249_RS00090 0.67 +1.0 16,018 + A4249_RS00095 0.12 -0.9 16,666 - A4249_RS00100 0.35 +1.1 16,702 - A4249_RS00100 0.46 +1.1 16,702 - A4249_RS00100 0.46 -0.1 16,702 - A4249_RS00100 0.46 -0.1 16,702 - A4249_RS00100 0.46 -0.2 16,801 - A4249_RS00100 0.74 +1.5 16,801 - A4249_RS00100 0.74 -0.7 16,869 - -0.7 16,869 - +0.1 16,869 - -0.9 16,869 - -2.3 16,869 - -0.1 16,869 - -0.4 16,869 - -0.2 16,969 + -0.5 17,043 - -1.2 17,127 + -0.1 17,127 + -1.1 17,127 + +0.2 17,127 + -0.6 17,142 + -0.9 17,143 - +0.7 17,416 + A4249_RS00105 0.27 -0.9 17,417 - A4249_RS00105 0.27 -1.2 17,545 + A4249_RS00105 0.40 +0.2 17,545 + A4249_RS00105 0.40 -0.4 17,546 - A4249_RS00105 0.40 -1.2 17,546 - A4249_RS00105 0.40 +0.1
Or see this region's nucleotide sequence