Strain Fitness in Erwinia amylovora T8 around OLJFJH_04030

Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04025 and OLJFJH_04030 are separated by 8 nucleotidesOLJFJH_04030 and OLJFJH_04035 are separated by 86 nucleotidesOLJFJH_04035 and OLJFJH_04040 are separated by 58 nucleotides OLJFJH_04025: OLJFJH_04025 - Fusaric acid resistance protein-like, at 765,029 to 767,140 _04025 OLJFJH_04030: OLJFJH_04030 - bifunctional succinylornithine transaminase/acetylornithine transaminase, at 767,149 to 768,366 _04030 OLJFJH_04035: OLJFJH_04035 - aminodeoxychorismate synthase component II, at 768,453 to 769,031 _04035 OLJFJH_04040: OLJFJH_04040 - peptidylprolyl isomerase A, at 769,090 to 769,662 _04040 Position (kb) 767 768 769Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 766.382 kb on - strand, within OLJFJH_04025at 766.398 kb on - strand, within OLJFJH_04025at 766.436 kb on + strand, within OLJFJH_04025at 766.437 kb on - strand, within OLJFJH_04025at 766.459 kb on - strand, within OLJFJH_04025at 766.476 kb on + strand, within OLJFJH_04025at 766.495 kb on + strand, within OLJFJH_04025at 766.598 kb on + strand, within OLJFJH_04025at 766.599 kb on - strand, within OLJFJH_04025at 766.599 kb on - strand, within OLJFJH_04025at 766.672 kb on + strand, within OLJFJH_04025at 766.672 kb on + strand, within OLJFJH_04025at 766.673 kb on - strand, within OLJFJH_04025at 766.673 kb on - strand, within OLJFJH_04025at 766.694 kb on + strand, within OLJFJH_04025at 766.694 kb on + strand, within OLJFJH_04025at 766.694 kb on + strand, within OLJFJH_04025at 766.694 kb on + strand, within OLJFJH_04025at 766.695 kb on - strand, within OLJFJH_04025at 766.695 kb on - strand, within OLJFJH_04025at 766.695 kb on - strand, within OLJFJH_04025at 766.695 kb on - strand, within OLJFJH_04025at 766.695 kb on - strand, within OLJFJH_04025at 766.695 kb on - strand, within OLJFJH_04025at 766.696 kb on + strand, within OLJFJH_04025at 766.696 kb on + strand, within OLJFJH_04025at 766.696 kb on + strand, within OLJFJH_04025at 766.697 kb on - strand, within OLJFJH_04025at 766.697 kb on - strand, within OLJFJH_04025at 766.742 kb on + strand, within OLJFJH_04025at 766.795 kb on + strand, within OLJFJH_04025at 766.795 kb on + strand, within OLJFJH_04025at 766.795 kb on + strand, within OLJFJH_04025at 766.795 kb on + strand, within OLJFJH_04025at 766.795 kb on + strand, within OLJFJH_04025at 766.795 kb on + strand, within OLJFJH_04025at 766.796 kb on - strand, within OLJFJH_04025at 766.796 kb on - strand, within OLJFJH_04025at 766.796 kb on - strand, within OLJFJH_04025at 766.813 kb on + strand, within OLJFJH_04025at 766.814 kb on - strand, within OLJFJH_04025at 766.831 kb on + strand, within OLJFJH_04025at 766.832 kb on - strand, within OLJFJH_04025at 766.832 kb on - strand, within OLJFJH_04025at 766.911 kb on - strand, within OLJFJH_04025at 767.083 kb on - strandat 767.095 kb on + strandat 767.095 kb on + strandat 767.096 kb on - strandat 767.096 kb on - strandat 767.096 kb on - strandat 767.150 kb on + strandat 767.190 kb on + strandat 767.318 kb on + strand, within OLJFJH_04030at 767.319 kb on - strand, within OLJFJH_04030at 767.553 kb on + strand, within OLJFJH_04030at 767.619 kb on + strand, within OLJFJH_04030at 767.619 kb on + strand, within OLJFJH_04030at 767.619 kb on + strand, within OLJFJH_04030at 767.619 kb on + strand, within OLJFJH_04030at 767.620 kb on - strand, within OLJFJH_04030at 767.620 kb on - strand, within OLJFJH_04030at 767.620 kb on - strand, within OLJFJH_04030at 767.645 kb on + strand, within OLJFJH_04030at 767.684 kb on - strand, within OLJFJH_04030at 767.808 kb on + strand, within OLJFJH_04030at 767.808 kb on + strand, within OLJFJH_04030at 767.808 kb on + strand, within OLJFJH_04030at 767.808 kb on + strand, within OLJFJH_04030at 767.809 kb on - strand, within OLJFJH_04030at 767.809 kb on - strand, within OLJFJH_04030at 767.809 kb on - strand, within OLJFJH_04030at 767.898 kb on - strand, within OLJFJH_04030at 767.976 kb on + strand, within OLJFJH_04030at 767.976 kb on + strand, within OLJFJH_04030at 767.976 kb on + strand, within OLJFJH_04030at 767.977 kb on - strand, within OLJFJH_04030at 768.175 kb on + strand, within OLJFJH_04030at 768.176 kb on - strand, within OLJFJH_04030at 768.236 kb on + strand, within OLJFJH_04030at 768.236 kb on + strand, within OLJFJH_04030at 768.237 kb on - strand, within OLJFJH_04030at 768.237 kb on - strand, within OLJFJH_04030at 768.447 kb on + strandat 768.448 kb on - strandat 768.560 kb on + strand, within OLJFJH_04035at 768.561 kb on - strand, within OLJFJH_04035at 768.691 kb on - strand, within OLJFJH_04035at 768.691 kb on - strand, within OLJFJH_04035at 768.691 kb on - strand, within OLJFJH_04035at 768.754 kb on - strand, within OLJFJH_04035at 768.754 kb on - strand, within OLJFJH_04035at 768.754 kb on - strand, within OLJFJH_04035at 768.979 kb on + strandat 768.985 kb on + strandat 768.986 kb on - strandat 769.009 kb on + strandat 769.010 kb on - strandat 769.010 kb on - strandat 769.087 kb on + strandat 769.087 kb on + strandat 769.088 kb on - strandat 769.091 kb on + strandat 769.092 kb on - strandat 769.117 kb on - strandat 769.205 kb on - strand, within OLJFJH_04040at 769.212 kb on + strand, within OLJFJH_04040at 769.279 kb on - strand, within OLJFJH_04040at 769.293 kb on + strand, within OLJFJH_04040at 769.293 kb on + strand, within OLJFJH_04040

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-4
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766,382 - OLJFJH_04025 0.64 -2.5
766,398 - OLJFJH_04025 0.65 -1.1
766,436 + OLJFJH_04025 0.67 -0.5
766,437 - OLJFJH_04025 0.67 -1.6
766,459 - OLJFJH_04025 0.68 -1.2
766,476 + OLJFJH_04025 0.69 -0.6
766,495 + OLJFJH_04025 0.69 +0.3
766,598 + OLJFJH_04025 0.74 -0.9
766,599 - OLJFJH_04025 0.74 -2.6
766,599 - OLJFJH_04025 0.74 +1.1
766,672 + OLJFJH_04025 0.78 +0.8
766,672 + OLJFJH_04025 0.78 +0.4
766,673 - OLJFJH_04025 0.78 -0.4
766,673 - OLJFJH_04025 0.78 -0.6
766,694 + OLJFJH_04025 0.79 -0.3
766,694 + OLJFJH_04025 0.79 -0.2
766,694 + OLJFJH_04025 0.79 -0.0
766,694 + OLJFJH_04025 0.79 -2.0
766,695 - OLJFJH_04025 0.79 +0.5
766,695 - OLJFJH_04025 0.79 +0.1
766,695 - OLJFJH_04025 0.79 -1.8
766,695 - OLJFJH_04025 0.79 -0.7
766,695 - OLJFJH_04025 0.79 -0.3
766,695 - OLJFJH_04025 0.79 -1.4
766,696 + OLJFJH_04025 0.79 +0.3
766,696 + OLJFJH_04025 0.79 -0.6
766,696 + OLJFJH_04025 0.79 -1.4
766,697 - OLJFJH_04025 0.79 -1.7
766,697 - OLJFJH_04025 0.79 -0.6
766,742 + OLJFJH_04025 0.81 +0.3
766,795 + OLJFJH_04025 0.84 +1.3
766,795 + OLJFJH_04025 0.84 +1.8
766,795 + OLJFJH_04025 0.84 -1.6
766,795 + OLJFJH_04025 0.84 -0.3
766,795 + OLJFJH_04025 0.84 -0.4
766,795 + OLJFJH_04025 0.84 +0.0
766,796 - OLJFJH_04025 0.84 -1.1
766,796 - OLJFJH_04025 0.84 +0.3
766,796 - OLJFJH_04025 0.84 -0.7
766,813 + OLJFJH_04025 0.84 -0.6
766,814 - OLJFJH_04025 0.85 -1.6
766,831 + OLJFJH_04025 0.85 +0.3
766,832 - OLJFJH_04025 0.85 -0.8
766,832 - OLJFJH_04025 0.85 +1.1
766,911 - OLJFJH_04025 0.89 +0.7
767,083 - -0.5
767,095 + +0.5
767,095 + -2.6
767,096 - -0.9
767,096 - +0.5
767,096 - -2.3
767,150 + +5.1
767,190 + -2.3
767,318 + OLJFJH_04030 0.14 -2.1
767,319 - OLJFJH_04030 0.14 -2.1
767,553 + OLJFJH_04030 0.33 -2.7
767,619 + OLJFJH_04030 0.39 -3.1
767,619 + OLJFJH_04030 0.39 -1.7
767,619 + OLJFJH_04030 0.39 -0.5
767,619 + OLJFJH_04030 0.39 -3.3
767,620 - OLJFJH_04030 0.39 -1.9
767,620 - OLJFJH_04030 0.39 +0.1
767,620 - OLJFJH_04030 0.39 -1.9
767,645 + OLJFJH_04030 0.41 -3.1
767,684 - OLJFJH_04030 0.44 -1.3
767,808 + OLJFJH_04030 0.54 -2.9
767,808 + OLJFJH_04030 0.54 -1.5
767,808 + OLJFJH_04030 0.54 -0.7
767,808 + OLJFJH_04030 0.54 -1.5
767,809 - OLJFJH_04030 0.54 -2.5
767,809 - OLJFJH_04030 0.54 -2.4
767,809 - OLJFJH_04030 0.54 -3.1
767,898 - OLJFJH_04030 0.61 -2.1
767,976 + OLJFJH_04030 0.68 -3.9
767,976 + OLJFJH_04030 0.68 -1.1
767,976 + OLJFJH_04030 0.68 -3.4
767,977 - OLJFJH_04030 0.68 -2.5
768,175 + OLJFJH_04030 0.84 -2.2
768,176 - OLJFJH_04030 0.84 -2.7
768,236 + OLJFJH_04030 0.89 -3.1
768,236 + OLJFJH_04030 0.89 -2.0
768,237 - OLJFJH_04030 0.89 -5.3
768,237 - OLJFJH_04030 0.89 -2.7
768,447 + +0.3
768,448 - -0.4
768,560 + OLJFJH_04035 0.18 +0.1
768,561 - OLJFJH_04035 0.19 -0.2
768,691 - OLJFJH_04035 0.41 -0.2
768,691 - OLJFJH_04035 0.41 -0.1
768,691 - OLJFJH_04035 0.41 -0.2
768,754 - OLJFJH_04035 0.52 -0.6
768,754 - OLJFJH_04035 0.52 -0.2
768,754 - OLJFJH_04035 0.52 +1.8
768,979 + -0.1
768,985 + -0.7
768,986 - +2.2
769,009 + -3.1
769,010 - +0.9
769,010 - +0.4
769,087 + -2.4
769,087 + -0.8
769,088 - +0.5
769,091 + -0.1
769,092 - +0.3
769,117 - -0.3
769,205 - OLJFJH_04040 0.20 +0.3
769,212 + OLJFJH_04040 0.21 +0.6
769,279 - OLJFJH_04040 0.33 +3.5
769,293 + OLJFJH_04040 0.35 +0.5
769,293 + OLJFJH_04040 0.35 +0.4

Or see this region's nucleotide sequence