Strain Fitness in Erwinia amylovora T8 around OLJFJH_03270

Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_03265 and OLJFJH_03270 are separated by 96 nucleotidesOLJFJH_03270 and OLJFJH_03275 are separated by 570 nucleotides OLJFJH_03265: OLJFJH_03265 - NAD-dependent dehydratase, at 613,236 to 614,306 _03265 OLJFJH_03270: OLJFJH_03270 - LysR family transcriptional regulator, at 614,403 to 615,311 _03270 OLJFJH_03275: OLJFJH_03275 - hypothetical protein, at 615,882 to 616,334 _03275 Position (kb) 614 615 616Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 613.433 kb on - strand, within OLJFJH_03265at 613.569 kb on + strand, within OLJFJH_03265at 613.570 kb on - strand, within OLJFJH_03265at 613.589 kb on + strand, within OLJFJH_03265at 613.590 kb on - strand, within OLJFJH_03265at 613.591 kb on + strand, within OLJFJH_03265at 613.592 kb on - strand, within OLJFJH_03265at 613.592 kb on - strand, within OLJFJH_03265at 613.742 kb on - strand, within OLJFJH_03265at 613.831 kb on + strand, within OLJFJH_03265at 613.832 kb on - strand, within OLJFJH_03265at 613.832 kb on - strand, within OLJFJH_03265at 613.832 kb on - strand, within OLJFJH_03265at 613.870 kb on + strand, within OLJFJH_03265at 613.870 kb on + strand, within OLJFJH_03265at 613.870 kb on + strand, within OLJFJH_03265at 613.871 kb on - strand, within OLJFJH_03265at 613.871 kb on - strand, within OLJFJH_03265at 613.873 kb on + strand, within OLJFJH_03265at 613.873 kb on + strand, within OLJFJH_03265at 613.874 kb on - strand, within OLJFJH_03265at 613.874 kb on - strand, within OLJFJH_03265at 613.874 kb on - strand, within OLJFJH_03265at 613.874 kb on - strand, within OLJFJH_03265at 613.964 kb on - strand, within OLJFJH_03265at 614.121 kb on - strand, within OLJFJH_03265at 614.131 kb on - strand, within OLJFJH_03265at 614.289 kb on + strandat 614.290 kb on - strandat 614.290 kb on - strandat 614.344 kb on - strandat 614.363 kb on + strandat 614.371 kb on - strandat 614.382 kb on - strandat 614.611 kb on - strand, within OLJFJH_03270at 614.611 kb on - strand, within OLJFJH_03270at 614.783 kb on + strand, within OLJFJH_03270at 614.846 kb on + strand, within OLJFJH_03270at 615.056 kb on + strand, within OLJFJH_03270at 615.056 kb on + strand, within OLJFJH_03270at 615.057 kb on - strand, within OLJFJH_03270at 615.063 kb on - strand, within OLJFJH_03270at 615.229 kb on - strandat 615.285 kb on - strandat 615.298 kb on + strandat 615.298 kb on + strandat 615.330 kb on - strandat 615.330 kb on - strandat 615.330 kb on - strandat 615.369 kb on + strandat 615.386 kb on + strandat 615.432 kb on + strandat 615.433 kb on - strandat 615.463 kb on + strandat 615.464 kb on - strandat 615.464 kb on - strandat 615.464 kb on - strandat 615.487 kb on + strandat 615.488 kb on - strandat 615.488 kb on - strandat 615.501 kb on - strandat 615.501 kb on - strandat 615.585 kb on - strandat 615.585 kb on - strandat 615.636 kb on + strandat 615.640 kb on + strandat 615.660 kb on + strandat 615.660 kb on + strandat 615.660 kb on + strandat 615.661 kb on - strandat 615.663 kb on - strandat 615.680 kb on - strandat 615.824 kb on + strandat 615.842 kb on + strandat 615.882 kb on - strandat 615.906 kb on - strandat 615.930 kb on + strand, within OLJFJH_03275at 615.930 kb on + strand, within OLJFJH_03275at 615.932 kb on + strand, within OLJFJH_03275at 615.978 kb on - strand, within OLJFJH_03275at 616.029 kb on - strand, within OLJFJH_03275at 616.066 kb on + strand, within OLJFJH_03275at 616.067 kb on - strand, within OLJFJH_03275at 616.067 kb on - strand, within OLJFJH_03275at 616.175 kb on - strand, within OLJFJH_03275at 616.197 kb on + strand, within OLJFJH_03275at 616.198 kb on - strand, within OLJFJH_03275at 616.198 kb on - strand, within OLJFJH_03275at 616.255 kb on + strand, within OLJFJH_03275at 616.255 kb on + strand, within OLJFJH_03275at 616.256 kb on - strand, within OLJFJH_03275at 616.256 kb on - strand, within OLJFJH_03275at 616.256 kb on - strand, within OLJFJH_03275at 616.256 kb on - strand, within OLJFJH_03275at 616.273 kb on + strand, within OLJFJH_03275at 616.305 kb on + strandat 616.305 kb on + strandat 616.305 kb on + strandat 616.305 kb on + strandat 616.306 kb on - strandat 616.306 kb on - strandat 616.306 kb on - strandat 616.306 kb on - strandat 616.306 kb on - strandat 616.308 kb on - strandat 616.309 kb on + strandat 616.309 kb on + strandat 616.309 kb on + strandat 616.310 kb on - strandat 616.310 kb on - strandat 616.310 kb on - strandat 616.310 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-4
remove
613,433 - OLJFJH_03265 0.18 +0.1
613,569 + OLJFJH_03265 0.31 +1.0
613,570 - OLJFJH_03265 0.31 -0.5
613,589 + OLJFJH_03265 0.33 +0.6
613,590 - OLJFJH_03265 0.33 -0.6
613,591 + OLJFJH_03265 0.33 -1.0
613,592 - OLJFJH_03265 0.33 +0.5
613,592 - OLJFJH_03265 0.33 -0.3
613,742 - OLJFJH_03265 0.47 -0.9
613,831 + OLJFJH_03265 0.56 -0.3
613,832 - OLJFJH_03265 0.56 +1.7
613,832 - OLJFJH_03265 0.56 -0.9
613,832 - OLJFJH_03265 0.56 +1.3
613,870 + OLJFJH_03265 0.59 -0.5
613,870 + OLJFJH_03265 0.59 +1.7
613,870 + OLJFJH_03265 0.59 +0.2
613,871 - OLJFJH_03265 0.59 +0.5
613,871 - OLJFJH_03265 0.59 -0.2
613,873 + OLJFJH_03265 0.59 -1.0
613,873 + OLJFJH_03265 0.59 -0.1
613,874 - OLJFJH_03265 0.60 +0.5
613,874 - OLJFJH_03265 0.60 +0.3
613,874 - OLJFJH_03265 0.60 -0.6
613,874 - OLJFJH_03265 0.60 +0.3
613,964 - OLJFJH_03265 0.68 -0.2
614,121 - OLJFJH_03265 0.83 -0.5
614,131 - OLJFJH_03265 0.84 +0.4
614,289 + -1.8
614,290 - -0.5
614,290 - -0.1
614,344 - -0.5
614,363 + -0.8
614,371 - +0.6
614,382 - +0.5
614,611 - OLJFJH_03270 0.23 +0.2
614,611 - OLJFJH_03270 0.23 +4.9
614,783 + OLJFJH_03270 0.42 -0.9
614,846 + OLJFJH_03270 0.49 +1.0
615,056 + OLJFJH_03270 0.72 +0.5
615,056 + OLJFJH_03270 0.72 -0.1
615,057 - OLJFJH_03270 0.72 -0.3
615,063 - OLJFJH_03270 0.73 -0.8
615,229 - +0.9
615,285 - -0.8
615,298 + +0.1
615,298 + +0.0
615,330 - +0.7
615,330 - +0.6
615,330 - -1.9
615,369 + -1.1
615,386 + -0.5
615,432 + +0.3
615,433 - +0.7
615,463 + -0.0
615,464 - -1.5
615,464 - -0.5
615,464 - -0.1
615,487 + -0.5
615,488 - -0.3
615,488 - -0.4
615,501 - +0.2
615,501 - -0.2
615,585 - -0.7
615,585 - -0.5
615,636 + -0.9
615,640 + +0.5
615,660 + +0.2
615,660 + +0.0
615,660 + -0.2
615,661 - -0.3
615,663 - -1.5
615,680 - -0.1
615,824 + +0.1
615,842 + +0.3
615,882 - +0.8
615,906 - +0.1
615,930 + OLJFJH_03275 0.11 +0.8
615,930 + OLJFJH_03275 0.11 -0.6
615,932 + OLJFJH_03275 0.11 -0.8
615,978 - OLJFJH_03275 0.21 -0.4
616,029 - OLJFJH_03275 0.32 +1.1
616,066 + OLJFJH_03275 0.41 -0.3
616,067 - OLJFJH_03275 0.41 -1.6
616,067 - OLJFJH_03275 0.41 +0.8
616,175 - OLJFJH_03275 0.65 -1.7
616,197 + OLJFJH_03275 0.70 -0.3
616,198 - OLJFJH_03275 0.70 +0.5
616,198 - OLJFJH_03275 0.70 -0.1
616,255 + OLJFJH_03275 0.82 +1.2
616,255 + OLJFJH_03275 0.82 +0.5
616,256 - OLJFJH_03275 0.83 -0.3
616,256 - OLJFJH_03275 0.83 +0.8
616,256 - OLJFJH_03275 0.83 -0.6
616,256 - OLJFJH_03275 0.83 +1.4
616,273 + OLJFJH_03275 0.86 -0.6
616,305 + -1.0
616,305 + -1.3
616,305 + +0.1
616,305 + -0.1
616,306 - -0.2
616,306 - +1.1
616,306 - -0.1
616,306 - +0.8
616,306 - +0.5
616,308 - -0.9
616,309 + +0.3
616,309 + -0.1
616,309 + +0.3
616,310 - +0.5
616,310 - -0.2
616,310 - -0.2
616,310 - -0.5

Or see this region's nucleotide sequence