Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_02725 and OLJFJH_02730 are separated by 96 nucleotides OLJFJH_02730 and OLJFJH_02735 are separated by 52 nucleotides OLJFJH_02735 and OLJFJH_02740 are separated by 319 nucleotides OLJFJH_02740 and OLJFJH_02745 are separated by 42 nucleotides
OLJFJH_02725: OLJFJH_02725 - hypothetical protein, at 492,254 to 492,955
_02725
OLJFJH_02730: OLJFJH_02730 - hypothetical protein, at 493,052 to 493,693
_02730
OLJFJH_02735: OLJFJH_02735 - hypothetical protein, at 493,746 to 494,171
_02735
OLJFJH_02740: OLJFJH_02740 - hypothetical protein, at 494,491 to 494,856
_02740
OLJFJH_02745: OLJFJH_02745 - conjugal transfer protein TraG N-terminal domain-containing protein, at 494,899 to 496,407
_02745
Position (kb) 493
494
495 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 493.322 kb on - strand, within OLJFJH_02730 at 493.568 kb on + strand, within OLJFJH_02730 at 493.633 kb on + strand at 493.660 kb on + strand at 493.715 kb on + strand at 493.748 kb on - strand at 493.796 kb on + strand, within OLJFJH_02735 at 493.877 kb on + strand, within OLJFJH_02735 at 493.877 kb on + strand, within OLJFJH_02735 at 493.918 kb on + strand, within OLJFJH_02735 at 493.918 kb on + strand, within OLJFJH_02735 at 493.919 kb on - strand, within OLJFJH_02735 at 493.929 kb on + strand, within OLJFJH_02735 at 493.929 kb on + strand, within OLJFJH_02735 at 493.959 kb on + strand, within OLJFJH_02735 at 494.146 kb on - strand at 494.200 kb on + strand at 494.201 kb on - strand at 494.215 kb on + strand at 494.245 kb on + strand at 494.326 kb on - strand at 494.337 kb on - strand at 494.339 kb on - strand at 494.416 kb on + strand at 494.462 kb on + strand at 494.462 kb on + strand at 494.463 kb on - strand at 494.466 kb on + strand at 494.466 kb on + strand at 494.466 kb on + strand at 494.467 kb on - strand at 494.467 kb on - strand at 494.553 kb on + strand, within OLJFJH_02740 at 494.554 kb on - strand, within OLJFJH_02740 at 494.554 kb on - strand, within OLJFJH_02740 at 494.663 kb on + strand, within OLJFJH_02740 at 494.705 kb on + strand, within OLJFJH_02740 at 494.713 kb on - strand, within OLJFJH_02740 at 494.754 kb on + strand, within OLJFJH_02740 at 494.759 kb on - strand, within OLJFJH_02740 at 494.824 kb on + strand at 494.989 kb on + strand at 494.989 kb on + strand at 495.019 kb on + strand at 495.118 kb on - strand, within OLJFJH_02745 at 495.126 kb on + strand, within OLJFJH_02745 at 495.127 kb on - strand, within OLJFJH_02745 at 495.144 kb on - strand, within OLJFJH_02745
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-4 remove 493,322 - OLJFJH_02730 0.42 -0.5 493,568 + OLJFJH_02730 0.80 -0.3 493,633 + -0.3 493,660 + +0.6 493,715 + -0.3 493,748 - +0.6 493,796 + OLJFJH_02735 0.12 -0.3 493,877 + OLJFJH_02735 0.31 +2.8 493,877 + OLJFJH_02735 0.31 -1.1 493,918 + OLJFJH_02735 0.40 +0.8 493,918 + OLJFJH_02735 0.40 +1.3 493,919 - OLJFJH_02735 0.41 +0.3 493,929 + OLJFJH_02735 0.43 -0.2 493,929 + OLJFJH_02735 0.43 +0.8 493,959 + OLJFJH_02735 0.50 +0.6 494,146 - +0.6 494,200 + +0.2 494,201 - +0.7 494,215 + -0.7 494,245 + +0.0 494,326 - -1.1 494,337 - -0.1 494,339 - +0.1 494,416 + +0.4 494,462 + +0.6 494,462 + -0.3 494,463 - -0.8 494,466 + +0.4 494,466 + -1.1 494,466 + +0.1 494,467 - -0.8 494,467 - -0.5 494,553 + OLJFJH_02740 0.17 -0.7 494,554 - OLJFJH_02740 0.17 +0.8 494,554 - OLJFJH_02740 0.17 +0.1 494,663 + OLJFJH_02740 0.47 -0.4 494,705 + OLJFJH_02740 0.58 -0.8 494,713 - OLJFJH_02740 0.61 -0.5 494,754 + OLJFJH_02740 0.72 -1.0 494,759 - OLJFJH_02740 0.73 -1.8 494,824 + -1.3 494,989 + -0.4 494,989 + +0.1 495,019 + +0.4 495,118 - OLJFJH_02745 0.15 -0.5 495,126 + OLJFJH_02745 0.15 +0.5 495,127 - OLJFJH_02745 0.15 +0.8 495,144 - OLJFJH_02745 0.16 -0.5
Or see this region's nucleotide sequence