Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01605 and OLJFJH_01610 are separated by 146 nucleotides OLJFJH_01610 and OLJFJH_01615 are separated by 73 nucleotides
OLJFJH_01605: OLJFJH_01605 - type II toxin-antitoxin system HipA family toxin YjjJ, at 268,876 to 270,216
_01605
OLJFJH_01610: OLJFJH_01610 - purine-nucleoside phosphorylase, at 270,363 to 271,082
_01610
OLJFJH_01615: OLJFJH_01615 - phosphopentomutase, at 271,156 to 272,379
_01615
Position (kb) 270
271
272 Strain fitness (log2 ratio) -2
-1
0
1
2 at 269.896 kb on + strand, within OLJFJH_01605 at 269.897 kb on - strand, within OLJFJH_01605 at 269.901 kb on - strand, within OLJFJH_01605 at 269.978 kb on + strand, within OLJFJH_01605 at 270.118 kb on - strand at 270.191 kb on - strand at 270.364 kb on + strand at 270.524 kb on - strand, within OLJFJH_01610 at 270.524 kb on - strand, within OLJFJH_01610 at 270.602 kb on - strand, within OLJFJH_01610 at 270.824 kb on + strand, within OLJFJH_01610 at 270.869 kb on + strand, within OLJFJH_01610 at 270.869 kb on + strand, within OLJFJH_01610 at 270.869 kb on + strand, within OLJFJH_01610 at 270.870 kb on - strand, within OLJFJH_01610 at 270.870 kb on - strand, within OLJFJH_01610 at 270.923 kb on + strand, within OLJFJH_01610 at 270.925 kb on + strand, within OLJFJH_01610 at 270.925 kb on + strand, within OLJFJH_01610 at 270.925 kb on + strand, within OLJFJH_01610 at 270.925 kb on + strand, within OLJFJH_01610 at 270.925 kb on + strand, within OLJFJH_01610 at 270.926 kb on - strand, within OLJFJH_01610 at 270.936 kb on - strand, within OLJFJH_01610 at 270.970 kb on - strand, within OLJFJH_01610 at 271.067 kb on + strand at 271.067 kb on + strand at 271.068 kb on - strand at 271.068 kb on - strand at 271.068 kb on - strand at 271.086 kb on + strand at 271.093 kb on + strand at 271.094 kb on - strand at 271.138 kb on + strand at 271.139 kb on - strand at 271.347 kb on + strand, within OLJFJH_01615 at 271.573 kb on - strand, within OLJFJH_01615 at 271.589 kb on + strand, within OLJFJH_01615 at 271.589 kb on + strand, within OLJFJH_01615 at 271.589 kb on + strand, within OLJFJH_01615 at 271.589 kb on + strand, within OLJFJH_01615 at 271.590 kb on - strand, within OLJFJH_01615 at 271.590 kb on - strand, within OLJFJH_01615 at 271.590 kb on - strand, within OLJFJH_01615 at 271.872 kb on + strand, within OLJFJH_01615 at 271.873 kb on - strand, within OLJFJH_01615 at 271.874 kb on + strand, within OLJFJH_01615 at 271.988 kb on - strand, within OLJFJH_01615
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-4 remove 269,896 + OLJFJH_01605 0.76 -0.2 269,897 - OLJFJH_01605 0.76 +1.2 269,901 - OLJFJH_01605 0.76 +0.4 269,978 + OLJFJH_01605 0.82 +0.0 270,118 - -0.1 270,191 - -1.0 270,364 + -0.5 270,524 - OLJFJH_01610 0.22 +0.1 270,524 - OLJFJH_01610 0.22 -1.4 270,602 - OLJFJH_01610 0.33 -0.3 270,824 + OLJFJH_01610 0.64 -0.6 270,869 + OLJFJH_01610 0.70 -1.5 270,869 + OLJFJH_01610 0.70 -1.2 270,869 + OLJFJH_01610 0.70 +0.4 270,870 - OLJFJH_01610 0.70 +0.0 270,870 - OLJFJH_01610 0.70 -1.0 270,923 + OLJFJH_01610 0.78 -0.8 270,925 + OLJFJH_01610 0.78 +0.4 270,925 + OLJFJH_01610 0.78 +1.8 270,925 + OLJFJH_01610 0.78 -0.9 270,925 + OLJFJH_01610 0.78 -0.9 270,925 + OLJFJH_01610 0.78 -0.8 270,926 - OLJFJH_01610 0.78 -0.7 270,936 - OLJFJH_01610 0.80 +0.6 270,970 - OLJFJH_01610 0.84 -2.4 271,067 + -0.5 271,067 + -0.8 271,068 - -0.3 271,068 - -0.6 271,068 - -0.4 271,086 + -0.2 271,093 + +0.4 271,094 - -0.3 271,138 + -0.9 271,139 - -0.3 271,347 + OLJFJH_01615 0.16 +0.1 271,573 - OLJFJH_01615 0.34 -0.2 271,589 + OLJFJH_01615 0.35 -0.1 271,589 + OLJFJH_01615 0.35 -1.7 271,589 + OLJFJH_01615 0.35 -1.6 271,589 + OLJFJH_01615 0.35 -2.3 271,590 - OLJFJH_01615 0.35 +0.7 271,590 - OLJFJH_01615 0.35 +0.2 271,590 - OLJFJH_01615 0.35 -0.3 271,872 + OLJFJH_01615 0.58 -0.6 271,873 - OLJFJH_01615 0.59 +0.4 271,874 + OLJFJH_01615 0.59 -0.6 271,988 - OLJFJH_01615 0.68 -0.3
Or see this region's nucleotide sequence