Strain Fitness in Erwinia amylovora T8 around OLJFJH_01495

Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01485 and OLJFJH_01490 are separated by 3 nucleotidesOLJFJH_01490 and OLJFJH_01495 are separated by 2 nucleotides OLJFJH_01485: OLJFJH_01485 - threonine synthase, at 242,484 to 243,770 _01485 OLJFJH_01490: OLJFJH_01490 - homoserine kinase, at 243,774 to 244,703 _01490 OLJFJH_01495: OLJFJH_01495 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 244,706 to 247,168 _01495 Position (kb) 244 245 246 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 243.732 kb on + strandat 243.733 kb on - strandat 243.752 kb on + strandat 243.759 kb on - strandat 243.759 kb on - strandat 243.760 kb on + strandat 243.760 kb on + strandat 243.761 kb on - strandat 243.771 kb on - strandat 243.786 kb on - strandat 243.804 kb on + strandat 243.816 kb on - strandat 243.870 kb on - strand, within OLJFJH_01490at 243.893 kb on + strand, within OLJFJH_01490at 244.017 kb on + strand, within OLJFJH_01490at 244.017 kb on + strand, within OLJFJH_01490at 244.017 kb on + strand, within OLJFJH_01490at 244.017 kb on + strand, within OLJFJH_01490at 244.018 kb on - strand, within OLJFJH_01490at 244.018 kb on - strand, within OLJFJH_01490at 244.058 kb on + strand, within OLJFJH_01490at 244.059 kb on - strand, within OLJFJH_01490at 244.104 kb on - strand, within OLJFJH_01490at 244.106 kb on + strand, within OLJFJH_01490at 244.106 kb on + strand, within OLJFJH_01490at 244.107 kb on - strand, within OLJFJH_01490at 244.326 kb on + strand, within OLJFJH_01490at 244.330 kb on - strand, within OLJFJH_01490at 244.351 kb on - strand, within OLJFJH_01490at 244.508 kb on - strand, within OLJFJH_01490at 244.707 kb on + strandat 244.732 kb on + strandat 244.732 kb on + strandat 244.732 kb on + strandat 244.732 kb on + strandat 244.736 kb on + strandat 244.751 kb on + strandat 244.751 kb on + strandat 244.827 kb on + strandat 244.827 kb on + strandat 244.827 kb on + strandat 244.827 kb on + strandat 244.827 kb on + strandat 244.828 kb on - strandat 245.042 kb on - strand, within OLJFJH_01495at 245.072 kb on + strand, within OLJFJH_01495at 245.073 kb on - strand, within OLJFJH_01495at 245.075 kb on - strand, within OLJFJH_01495at 245.081 kb on + strand, within OLJFJH_01495at 245.082 kb on - strand, within OLJFJH_01495at 245.355 kb on + strand, within OLJFJH_01495at 245.406 kb on + strand, within OLJFJH_01495at 245.406 kb on + strand, within OLJFJH_01495at 245.406 kb on + strand, within OLJFJH_01495at 245.407 kb on - strand, within OLJFJH_01495at 245.407 kb on - strand, within OLJFJH_01495at 245.413 kb on - strand, within OLJFJH_01495at 245.413 kb on - strand, within OLJFJH_01495at 245.413 kb on - strand, within OLJFJH_01495at 245.423 kb on - strand, within OLJFJH_01495at 245.423 kb on - strand, within OLJFJH_01495at 245.506 kb on + strand, within OLJFJH_01495at 245.506 kb on + strand, within OLJFJH_01495at 245.507 kb on - strand, within OLJFJH_01495at 245.538 kb on + strand, within OLJFJH_01495at 245.539 kb on - strand, within OLJFJH_01495at 245.539 kb on - strand, within OLJFJH_01495at 245.635 kb on + strand, within OLJFJH_01495at 245.891 kb on - strand, within OLJFJH_01495at 245.891 kb on - strand, within OLJFJH_01495at 245.893 kb on + strand, within OLJFJH_01495at 245.893 kb on + strand, within OLJFJH_01495at 245.894 kb on - strand, within OLJFJH_01495at 245.894 kb on - strand, within OLJFJH_01495at 245.894 kb on - strand, within OLJFJH_01495at 245.953 kb on + strand, within OLJFJH_01495at 245.953 kb on + strand, within OLJFJH_01495at 245.954 kb on - strand, within OLJFJH_01495at 246.033 kb on + strand, within OLJFJH_01495at 246.033 kb on + strand, within OLJFJH_01495at 246.094 kb on + strand, within OLJFJH_01495at 246.095 kb on - strand, within OLJFJH_01495at 246.095 kb on - strand, within OLJFJH_01495at 246.102 kb on + strand, within OLJFJH_01495at 246.239 kb on - strand, within OLJFJH_01495at 246.418 kb on - strand, within OLJFJH_01495at 246.471 kb on + strand, within OLJFJH_01495at 246.471 kb on + strand, within OLJFJH_01495at 246.472 kb on - strand, within OLJFJH_01495at 246.472 kb on - strand, within OLJFJH_01495at 246.472 kb on - strand, within OLJFJH_01495at 246.543 kb on + strand, within OLJFJH_01495at 246.544 kb on - strand, within OLJFJH_01495at 246.619 kb on + strand, within OLJFJH_01495at 246.847 kb on + strand, within OLJFJH_01495at 246.847 kb on + strand, within OLJFJH_01495at 246.961 kb on + strandat 246.962 kb on - strandat 246.980 kb on - strandat 247.245 kb on - strandat 247.264 kb on + strandat 247.289 kb on - strandat 247.398 kb on - strandat 247.416 kb on + strandat 247.542 kb on + strandat 247.542 kb on + strandat 247.543 kb on - strandat 247.544 kb on + strandat 247.756 kb on + strandat 247.798 kb on + strandat 247.798 kb on + strandat 247.816 kb on - strandat 247.842 kb on + strandat 247.842 kb on + strandat 247.842 kb on + strandat 247.843 kb on - strandat 247.855 kb on + strandat 247.855 kb on + strandat 247.856 kb on - strandat 247.901 kb on + strandat 247.902 kb on - strandat 247.934 kb on - strandat 247.961 kb on + strandat 247.992 kb on + strandat 247.992 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-4
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243,732 + -1.7
243,733 - +0.4
243,752 + -2.9
243,759 - -2.7
243,759 - +0.1
243,760 + -2.4
243,760 + -1.2
243,761 - -2.1
243,771 - -2.1
243,786 - -1.0
243,804 + -1.8
243,816 - -2.1
243,870 - OLJFJH_01490 0.10 -2.5
243,893 + OLJFJH_01490 0.13 -3.2
244,017 + OLJFJH_01490 0.26 -3.2
244,017 + OLJFJH_01490 0.26 -2.5
244,017 + OLJFJH_01490 0.26 -2.1
244,017 + OLJFJH_01490 0.26 -2.6
244,018 - OLJFJH_01490 0.26 -0.7
244,018 - OLJFJH_01490 0.26 -2.0
244,058 + OLJFJH_01490 0.31 -1.4
244,059 - OLJFJH_01490 0.31 -3.3
244,104 - OLJFJH_01490 0.35 -2.6
244,106 + OLJFJH_01490 0.36 -2.8
244,106 + OLJFJH_01490 0.36 -0.7
244,107 - OLJFJH_01490 0.36 -2.0
244,326 + OLJFJH_01490 0.59 -2.1
244,330 - OLJFJH_01490 0.60 -2.8
244,351 - OLJFJH_01490 0.62 -2.7
244,508 - OLJFJH_01490 0.79 -2.0
244,707 + -1.8
244,732 + -2.4
244,732 + -1.4
244,732 + -2.0
244,732 + -1.0
244,736 + -0.3
244,751 + -1.7
244,751 + +0.6
244,827 + -2.1
244,827 + -2.2
244,827 + +0.2
244,827 + -1.5
244,827 + -0.9
244,828 - -1.2
245,042 - OLJFJH_01495 0.14 -1.4
245,072 + OLJFJH_01495 0.15 -1.4
245,073 - OLJFJH_01495 0.15 -0.9
245,075 - OLJFJH_01495 0.15 -0.2
245,081 + OLJFJH_01495 0.15 -1.2
245,082 - OLJFJH_01495 0.15 -0.6
245,355 + OLJFJH_01495 0.26 -1.5
245,406 + OLJFJH_01495 0.28 -1.5
245,406 + OLJFJH_01495 0.28 +0.2
245,406 + OLJFJH_01495 0.28 -2.2
245,407 - OLJFJH_01495 0.28 -1.7
245,407 - OLJFJH_01495 0.28 -0.9
245,413 - OLJFJH_01495 0.29 -1.7
245,413 - OLJFJH_01495 0.29 -0.4
245,413 - OLJFJH_01495 0.29 -1.1
245,423 - OLJFJH_01495 0.29 -1.5
245,423 - OLJFJH_01495 0.29 -0.8
245,506 + OLJFJH_01495 0.32 -3.0
245,506 + OLJFJH_01495 0.32 -1.9
245,507 - OLJFJH_01495 0.33 -0.7
245,538 + OLJFJH_01495 0.34 -2.6
245,539 - OLJFJH_01495 0.34 -1.4
245,539 - OLJFJH_01495 0.34 -0.8
245,635 + OLJFJH_01495 0.38 -1.2
245,891 - OLJFJH_01495 0.48 -0.3
245,891 - OLJFJH_01495 0.48 -1.3
245,893 + OLJFJH_01495 0.48 -1.4
245,893 + OLJFJH_01495 0.48 -1.1
245,894 - OLJFJH_01495 0.48 -2.0
245,894 - OLJFJH_01495 0.48 -1.5
245,894 - OLJFJH_01495 0.48 -0.5
245,953 + OLJFJH_01495 0.51 -0.7
245,953 + OLJFJH_01495 0.51 -1.7
245,954 - OLJFJH_01495 0.51 -0.7
246,033 + OLJFJH_01495 0.54 +0.3
246,033 + OLJFJH_01495 0.54 +0.6
246,094 + OLJFJH_01495 0.56 -1.2
246,095 - OLJFJH_01495 0.56 -1.5
246,095 - OLJFJH_01495 0.56 -1.1
246,102 + OLJFJH_01495 0.57 -0.7
246,239 - OLJFJH_01495 0.62 -1.2
246,418 - OLJFJH_01495 0.70 -1.6
246,471 + OLJFJH_01495 0.72 -1.5
246,471 + OLJFJH_01495 0.72 -1.7
246,472 - OLJFJH_01495 0.72 -2.1
246,472 - OLJFJH_01495 0.72 -0.3
246,472 - OLJFJH_01495 0.72 -1.3
246,543 + OLJFJH_01495 0.75 -3.3
246,544 - OLJFJH_01495 0.75 -0.7
246,619 + OLJFJH_01495 0.78 -2.1
246,847 + OLJFJH_01495 0.87 -1.2
246,847 + OLJFJH_01495 0.87 -0.6
246,961 + -2.0
246,962 - -1.4
246,980 - -1.7
247,245 - +1.1
247,264 + -2.2
247,289 - +0.1
247,398 - -0.7
247,416 + -0.6
247,542 + -0.3
247,542 + +1.0
247,543 - +0.4
247,544 + +0.3
247,756 + -0.5
247,798 + +0.2
247,798 + -1.7
247,816 - +2.1
247,842 + -2.7
247,842 + -1.9
247,842 + +0.8
247,843 - +0.3
247,855 + -0.3
247,855 + -0.7
247,856 - -0.8
247,901 + -0.5
247,902 - -0.7
247,934 - -0.5
247,961 + +0.1
247,992 + -0.5
247,992 + -0.7

Or see this region's nucleotide sequence