Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01370 and OLJFJH_01375 overlap by 4 nucleotides OLJFJH_01375 and OLJFJH_01380 are separated by 13 nucleotides OLJFJH_01380 and OLJFJH_01385 are separated by 41 nucleotides OLJFJH_01385 and OLJFJH_01390 are separated by 189 nucleotides
OLJFJH_01370: OLJFJH_01370 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA, at 217,048 to 217,875
_01370
OLJFJH_01375: OLJFJH_01375 - Co2+/Mg2+ efflux protein ApaG, at 217,872 to 218,249
_01375
OLJFJH_01380: OLJFJH_01380 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 218,263 to 219,087
_01380
OLJFJH_01385: OLJFJH_01385 - type 3 dihydrofolate reductase, at 219,129 to 219,611
_01385
OLJFJH_01390: OLJFJH_01390 - lysine transporter LysE, at 219,801 to 220,415
_01390
Position (kb) 218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 217.428 kb on + strand, within OLJFJH_01370 at 217.428 kb on + strand, within OLJFJH_01370 at 217.432 kb on + strand, within OLJFJH_01370 at 217.432 kb on + strand, within OLJFJH_01370 at 217.432 kb on + strand, within OLJFJH_01370 at 217.452 kb on + strand, within OLJFJH_01370 at 217.546 kb on + strand, within OLJFJH_01370 at 217.705 kb on - strand, within OLJFJH_01370 at 217.830 kb on + strand at 217.914 kb on + strand, within OLJFJH_01375 at 217.915 kb on - strand, within OLJFJH_01375 at 217.915 kb on - strand, within OLJFJH_01375 at 217.951 kb on - strand, within OLJFJH_01375 at 217.962 kb on + strand, within OLJFJH_01375 at 217.963 kb on - strand, within OLJFJH_01375 at 217.963 kb on - strand, within OLJFJH_01375 at 217.992 kb on - strand, within OLJFJH_01375 at 218.091 kb on - strand, within OLJFJH_01375 at 218.091 kb on - strand, within OLJFJH_01375 at 218.116 kb on - strand, within OLJFJH_01375 at 218.272 kb on + strand at 218.273 kb on - strand at 218.276 kb on + strand at 218.277 kb on - strand at 218.560 kb on - strand, within OLJFJH_01380 at 218.585 kb on + strand, within OLJFJH_01380 at 218.585 kb on + strand, within OLJFJH_01380 at 218.701 kb on - strand, within OLJFJH_01380 at 218.719 kb on - strand, within OLJFJH_01380 at 218.736 kb on + strand, within OLJFJH_01380 at 218.816 kb on - strand, within OLJFJH_01380 at 218.923 kb on + strand, within OLJFJH_01380 at 218.924 kb on - strand, within OLJFJH_01380 at 218.924 kb on - strand, within OLJFJH_01380 at 219.085 kb on + strand at 219.085 kb on + strand at 219.614 kb on - strand at 219.614 kb on - strand at 219.648 kb on - strand at 219.648 kb on - strand at 219.648 kb on - strand at 219.651 kb on + strand at 219.651 kb on + strand at 219.686 kb on + strand at 219.691 kb on - strand at 219.691 kb on - strand at 219.711 kb on - strand at 219.800 kb on + strand at 219.800 kb on + strand at 219.801 kb on - strand at 219.801 kb on - strand at 219.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-4 remove 217,428 + OLJFJH_01370 0.46 -0.7 217,428 + OLJFJH_01370 0.46 -0.1 217,432 + OLJFJH_01370 0.46 -2.4 217,432 + OLJFJH_01370 0.46 -1.9 217,432 + OLJFJH_01370 0.46 -0.9 217,452 + OLJFJH_01370 0.49 -0.5 217,546 + OLJFJH_01370 0.60 -2.0 217,705 - OLJFJH_01370 0.79 -0.5 217,830 + -0.7 217,914 + OLJFJH_01375 0.11 +0.5 217,915 - OLJFJH_01375 0.11 -1.5 217,915 - OLJFJH_01375 0.11 -1.8 217,951 - OLJFJH_01375 0.21 +0.7 217,962 + OLJFJH_01375 0.24 -1.2 217,963 - OLJFJH_01375 0.24 +0.3 217,963 - OLJFJH_01375 0.24 -2.4 217,992 - OLJFJH_01375 0.32 -2.3 218,091 - OLJFJH_01375 0.58 -0.7 218,091 - OLJFJH_01375 0.58 +0.0 218,116 - OLJFJH_01375 0.65 -3.1 218,272 + -0.3 218,273 - -2.7 218,276 + -2.1 218,277 - -1.8 218,560 - OLJFJH_01380 0.36 -1.8 218,585 + OLJFJH_01380 0.39 -0.6 218,585 + OLJFJH_01380 0.39 -2.0 218,701 - OLJFJH_01380 0.53 -1.6 218,719 - OLJFJH_01380 0.55 -0.6 218,736 + OLJFJH_01380 0.57 -0.4 218,816 - OLJFJH_01380 0.67 -0.6 218,923 + OLJFJH_01380 0.80 -1.9 218,924 - OLJFJH_01380 0.80 -1.7 218,924 - OLJFJH_01380 0.80 -2.0 219,085 + -0.4 219,085 + -1.2 219,614 - -1.7 219,614 - -0.5 219,648 - +0.8 219,648 - -0.4 219,648 - -0.2 219,651 + -3.2 219,651 + -0.4 219,686 + -0.2 219,691 - +1.6 219,691 - -0.3 219,711 - -2.3 219,800 + +1.6 219,800 + +0.5 219,801 - +0.6 219,801 - -0.6 219,818 - -0.0
Or see this region's nucleotide sequence