Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_00670 and OLJFJH_00675 are separated by 318 nucleotides OLJFJH_00675 and OLJFJH_00680 are separated by 104 nucleotides OLJFJH_00680 and OLJFJH_00685 are separated by 264 nucleotides
OLJFJH_00670: OLJFJH_00670 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 48,473 to 49,171
_00670
OLJFJH_00675: OLJFJH_00675 - hypothetical protein, at 49,490 to 49,735
_00675
OLJFJH_00680: OLJFJH_00680 - iron-sulfur cluster insertion protein ErpA, at 49,840 to 50,184
_00680
OLJFJH_00685: OLJFJH_00685 - glutamate-1-semialdehyde 2 1-aminomutase, at 50,449 to 51,729
_00685
Position (kb) 49
50 Strain fitness (log2 ratio) -1
0
1
2 at 49.259 kb on - strand at 49.299 kb on - strand at 49.337 kb on + strand at 49.338 kb on - strand at 49.375 kb on + strand at 49.375 kb on + strand at 49.384 kb on - strand at 49.439 kb on - strand at 49.439 kb on - strand at 49.583 kb on + strand, within OLJFJH_00675 at 49.583 kb on + strand, within OLJFJH_00675 at 49.716 kb on + strand at 49.716 kb on + strand at 50.257 kb on - strand at 50.257 kb on - strand at 50.370 kb on + strand at 50.407 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-4 remove 49,259 - -0.3 49,299 - +0.2 49,337 + -0.3 49,338 - -0.6 49,375 + -0.2 49,375 + +0.5 49,384 - +0.3 49,439 - -0.0 49,439 - -1.1 49,583 + OLJFJH_00675 0.38 -1.7 49,583 + OLJFJH_00675 0.38 -1.1 49,716 + -0.9 49,716 + +0.3 50,257 - -0.4 50,257 - -0.8 50,370 + +1.8 50,407 + +0.0
Or see this region's nucleotide sequence