Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_14995 and OLJFJH_15000 are separated by 14 nucleotides OLJFJH_15000 and OLJFJH_15005 are separated by 12 nucleotides OLJFJH_15005 and OLJFJH_15010 overlap by 4 nucleotides OLJFJH_15010 and OLJFJH_15015 overlap by 8 nucleotides
OLJFJH_14995: OLJFJH_14995 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 3,169,668 to 3,170,759
_14995
OLJFJH_15000: OLJFJH_15000 - type III secretion system export apparatus subunit SctT, at 3,170,774 to 3,171,544
_15000
OLJFJH_15005: OLJFJH_15005 - type III secretion system export apparatus subunit SctS, at 3,171,557 to 3,171,811
_15005
OLJFJH_15010: OLJFJH_15010 - EscR/YscR/HrcR family type III secretion system export apparatus protein, at 3,171,808 to 3,172,479
_15010
OLJFJH_15015: OLJFJH_15015 - Type III flagellar switch regulator (C-ring) FliN C-term, at 3,172,472 to 3,173,395
_15015
Position (kb) 3170
3171
3172 Strain fitness (log2 ratio) -1
0
1
2 at 3171.011 kb on + strand, within OLJFJH_15000 at 3171.484 kb on - strand at 3171.635 kb on - strand, within OLJFJH_15005 at 3171.645 kb on - strand, within OLJFJH_15005 at 3172.349 kb on - strand, within OLJFJH_15010 at 3172.351 kb on - strand, within OLJFJH_15010
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-8 remove 3,171,011 + OLJFJH_15000 0.31 -1.2 3,171,484 - -0.5 3,171,635 - OLJFJH_15005 0.31 -1.3 3,171,645 - OLJFJH_15005 0.35 +0.4 3,172,349 - OLJFJH_15010 0.81 +2.5 3,172,351 - OLJFJH_15010 0.81 -0.5
Or see this region's nucleotide sequence