Strain Fitness in Erwinia amylovora T8 around OLJFJH_14255

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_14245 and OLJFJH_14250 are separated by 75 nucleotidesOLJFJH_14250 and OLJFJH_14255 are separated by 169 nucleotidesOLJFJH_14255 and OLJFJH_14260 are separated by 51 nucleotidesOLJFJH_14260 and OLJFJH_14265 are separated by 43 nucleotides OLJFJH_14245: OLJFJH_14245 - hypothetical protein, at 3,009,964 to 3,010,149 _14245 OLJFJH_14250: OLJFJH_14250 - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 3,010,225 to 3,010,974 _14250 OLJFJH_14255: OLJFJH_14255 - DUF1283 domain-containing protein, at 3,011,144 to 3,011,491 _14255 OLJFJH_14260: OLJFJH_14260 - DUF1161 domain-containing protein, at 3,011,543 to 3,011,836 _14260 OLJFJH_14265: OLJFJH_14265 - MFS transporter, at 3,011,880 to 3,013,346 _14265 Position (kb) 3011 3012Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3010.148 kb on - strandat 3010.159 kb on + strandat 3010.162 kb on + strandat 3010.185 kb on + strandat 3010.232 kb on + strandat 3010.232 kb on + strandat 3010.454 kb on + strand, within OLJFJH_14250at 3010.454 kb on + strand, within OLJFJH_14250at 3010.455 kb on - strand, within OLJFJH_14250at 3010.558 kb on + strand, within OLJFJH_14250at 3010.558 kb on + strand, within OLJFJH_14250at 3010.558 kb on + strand, within OLJFJH_14250at 3010.558 kb on + strand, within OLJFJH_14250at 3010.558 kb on + strand, within OLJFJH_14250at 3010.558 kb on + strand, within OLJFJH_14250at 3010.559 kb on - strand, within OLJFJH_14250at 3010.559 kb on - strand, within OLJFJH_14250at 3010.559 kb on - strand, within OLJFJH_14250at 3010.559 kb on - strand, within OLJFJH_14250at 3010.559 kb on - strand, within OLJFJH_14250at 3010.559 kb on - strand, within OLJFJH_14250at 3010.559 kb on - strand, within OLJFJH_14250at 3010.561 kb on - strand, within OLJFJH_14250at 3010.561 kb on - strand, within OLJFJH_14250at 3010.561 kb on - strand, within OLJFJH_14250at 3010.561 kb on - strand, within OLJFJH_14250at 3010.611 kb on + strand, within OLJFJH_14250at 3010.611 kb on + strand, within OLJFJH_14250at 3010.614 kb on + strand, within OLJFJH_14250at 3010.614 kb on + strand, within OLJFJH_14250at 3010.615 kb on - strand, within OLJFJH_14250at 3010.617 kb on + strand, within OLJFJH_14250at 3010.656 kb on + strand, within OLJFJH_14250at 3010.657 kb on - strand, within OLJFJH_14250at 3010.826 kb on - strand, within OLJFJH_14250at 3010.885 kb on - strand, within OLJFJH_14250at 3010.973 kb on - strandat 3011.081 kb on + strandat 3011.082 kb on - strandat 3011.082 kb on - strandat 3011.083 kb on + strandat 3011.205 kb on + strand, within OLJFJH_14255at 3011.206 kb on - strand, within OLJFJH_14255at 3011.266 kb on + strand, within OLJFJH_14255at 3011.267 kb on - strand, within OLJFJH_14255at 3011.499 kb on + strandat 3011.505 kb on + strandat 3011.505 kb on + strandat 3011.505 kb on + strandat 3011.506 kb on - strandat 3011.508 kb on - strandat 3011.508 kb on - strandat 3011.565 kb on + strandat 3011.566 kb on - strandat 3011.566 kb on - strandat 3011.629 kb on + strand, within OLJFJH_14260at 3011.629 kb on + strand, within OLJFJH_14260at 3011.630 kb on - strand, within OLJFJH_14260at 3011.630 kb on - strand, within OLJFJH_14260at 3011.762 kb on + strand, within OLJFJH_14260at 3011.774 kb on + strand, within OLJFJH_14260at 3011.774 kb on + strand, within OLJFJH_14260at 3011.871 kb on + strandat 3011.989 kb on - strandat 3012.012 kb on + strandat 3012.012 kb on + strandat 3012.012 kb on + strandat 3012.088 kb on + strand, within OLJFJH_14265at 3012.089 kb on - strand, within OLJFJH_14265at 3012.089 kb on - strand, within OLJFJH_14265at 3012.089 kb on - strand, within OLJFJH_14265at 3012.408 kb on + strand, within OLJFJH_14265

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-8
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3,010,148 - -0.7
3,010,159 + -0.1
3,010,162 + -0.9
3,010,185 + +1.0
3,010,232 + -1.3
3,010,232 + -0.3
3,010,454 + OLJFJH_14250 0.31 -0.4
3,010,454 + OLJFJH_14250 0.31 -0.0
3,010,455 - OLJFJH_14250 0.31 +0.0
3,010,558 + OLJFJH_14250 0.44 +1.8
3,010,558 + OLJFJH_14250 0.44 -0.4
3,010,558 + OLJFJH_14250 0.44 -0.5
3,010,558 + OLJFJH_14250 0.44 +1.0
3,010,558 + OLJFJH_14250 0.44 -1.0
3,010,558 + OLJFJH_14250 0.44 -0.2
3,010,559 - OLJFJH_14250 0.45 -0.7
3,010,559 - OLJFJH_14250 0.45 +1.7
3,010,559 - OLJFJH_14250 0.45 -0.7
3,010,559 - OLJFJH_14250 0.45 -0.5
3,010,559 - OLJFJH_14250 0.45 -0.1
3,010,559 - OLJFJH_14250 0.45 +0.3
3,010,559 - OLJFJH_14250 0.45 +1.3
3,010,561 - OLJFJH_14250 0.45 +0.8
3,010,561 - OLJFJH_14250 0.45 -0.3
3,010,561 - OLJFJH_14250 0.45 +0.2
3,010,561 - OLJFJH_14250 0.45 -1.1
3,010,611 + OLJFJH_14250 0.51 +0.0
3,010,611 + OLJFJH_14250 0.51 +0.2
3,010,614 + OLJFJH_14250 0.52 +0.3
3,010,614 + OLJFJH_14250 0.52 -0.6
3,010,615 - OLJFJH_14250 0.52 -1.6
3,010,617 + OLJFJH_14250 0.52 -0.5
3,010,656 + OLJFJH_14250 0.57 +0.5
3,010,657 - OLJFJH_14250 0.58 +0.8
3,010,826 - OLJFJH_14250 0.80 -0.4
3,010,885 - OLJFJH_14250 0.88 -0.9
3,010,973 - -0.2
3,011,081 + -0.2
3,011,082 - +0.2
3,011,082 - +0.2
3,011,083 + -1.3
3,011,205 + OLJFJH_14255 0.18 -2.5
3,011,206 - OLJFJH_14255 0.18 -0.2
3,011,266 + OLJFJH_14255 0.35 -0.7
3,011,267 - OLJFJH_14255 0.35 -1.4
3,011,499 + -0.3
3,011,505 + -0.1
3,011,505 + -1.2
3,011,505 + -0.1
3,011,506 - -0.1
3,011,508 - -0.4
3,011,508 - -0.1
3,011,565 + +1.1
3,011,566 - +3.1
3,011,566 - +0.9
3,011,629 + OLJFJH_14260 0.29 +0.6
3,011,629 + OLJFJH_14260 0.29 -0.1
3,011,630 - OLJFJH_14260 0.30 +3.4
3,011,630 - OLJFJH_14260 0.30 +1.0
3,011,762 + OLJFJH_14260 0.74 +0.1
3,011,774 + OLJFJH_14260 0.79 +0.2
3,011,774 + OLJFJH_14260 0.79 -0.9
3,011,871 + +0.7
3,011,989 - +0.6
3,012,012 + -1.9
3,012,012 + -0.2
3,012,012 + +0.2
3,012,088 + OLJFJH_14265 0.14 +0.2
3,012,089 - OLJFJH_14265 0.14 -0.8
3,012,089 - OLJFJH_14265 0.14 +0.1
3,012,089 - OLJFJH_14265 0.14 -0.1
3,012,408 + OLJFJH_14265 0.36 +0.9

Or see this region's nucleotide sequence