Strain Fitness in Erwinia amylovora T8 around OLJFJH_09500

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_09485 and OLJFJH_09490 overlap by 14 nucleotidesOLJFJH_09490 and OLJFJH_09495 overlap by 4 nucleotidesOLJFJH_09495 and OLJFJH_09500 are separated by 12 nucleotidesOLJFJH_09500 and OLJFJH_09505 are separated by 12 nucleotides OLJFJH_09485: OLJFJH_09485 - type III secretion system protein, at 1,961,705 to 1,962,631 _09485 OLJFJH_09490: OLJFJH_09490 - EscR/YscR/HrcR family type III secretion system export apparatus protein, at 1,962,618 to 1,963,289 _09490 OLJFJH_09495: OLJFJH_09495 - type III secretion system export apparatus subunit SctS, at 1,963,286 to 1,963,540 _09495 OLJFJH_09500: OLJFJH_09500 - type III secretion system export apparatus subunit SctT, at 1,963,553 to 1,964,317 _09500 OLJFJH_09505: OLJFJH_09505 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 1,964,330 to 1,965,445 _09505 Position (kb) 1963 1964 1965Strain fitness (log2 ratio) -1 0 1at 1962.719 kb on + strand, within OLJFJH_09490at 1962.840 kb on + strand, within OLJFJH_09490at 1963.277 kb on + strandat 1963.469 kb on - strand, within OLJFJH_09495at 1963.523 kb on + strandat 1963.697 kb on - strand, within OLJFJH_09500at 1963.922 kb on - strand, within OLJFJH_09500at 1964.013 kb on - strand, within OLJFJH_09500at 1964.405 kb on - strandat 1964.489 kb on + strand, within OLJFJH_09505at 1964.623 kb on - strand, within OLJFJH_09505at 1965.002 kb on - strand, within OLJFJH_09505at 1965.179 kb on - strand, within OLJFJH_09505at 1965.237 kb on - strand, within OLJFJH_09505at 1965.238 kb on + strand, within OLJFJH_09505at 1965.239 kb on - strand, within OLJFJH_09505at 1965.270 kb on - strand, within OLJFJH_09505

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-8
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1,962,719 + OLJFJH_09490 0.15 -1.3
1,962,840 + OLJFJH_09490 0.33 +0.3
1,963,277 + -0.4
1,963,469 - OLJFJH_09495 0.72 -1.5
1,963,523 + -1.2
1,963,697 - OLJFJH_09500 0.19 +0.3
1,963,922 - OLJFJH_09500 0.48 -0.9
1,964,013 - OLJFJH_09500 0.60 -0.9
1,964,405 - -0.4
1,964,489 + OLJFJH_09505 0.14 -0.2
1,964,623 - OLJFJH_09505 0.26 -0.8
1,965,002 - OLJFJH_09505 0.60 +0.5
1,965,179 - OLJFJH_09505 0.76 +0.5
1,965,237 - OLJFJH_09505 0.81 -0.5
1,965,238 + OLJFJH_09505 0.81 -0.9
1,965,239 - OLJFJH_09505 0.81 +0.4
1,965,270 - OLJFJH_09505 0.84 -0.4

Or see this region's nucleotide sequence