Strain Fitness in Erwinia amylovora T8 around OLJFJH_08740

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_08735 and OLJFJH_08740 are separated by 94 nucleotidesOLJFJH_08740 and OLJFJH_08750 are separated by 375 nucleotidesOLJFJH_08750 and OLJFJH_08755 are separated by 239 nucleotides OLJFJH_08735: OLJFJH_08735 - phosphoglycerate dehydrogenase, at 1,789,458 to 1,790,696 _08735 OLJFJH_08740: OLJFJH_08740 - 5-formyltetrahydrofolate cyclo-ligase, at 1,790,791 to 1,791,378 _08740 OLJFJH_08750: OLJFJH_08750 - cell division protein ZapA, at 1,791,754 to 1,792,083 _08750 OLJFJH_08755: OLJFJH_08755 - YecA family protein, at 1,792,323 to 1,792,832 _08755 Position (kb) 1790 1791 1792Strain fitness (log2 ratio) -3 -2 -1 0 1at 1789.896 kb on + strand, within OLJFJH_08735at 1789.897 kb on - strand, within OLJFJH_08735at 1789.946 kb on + strand, within OLJFJH_08735at 1789.987 kb on + strand, within OLJFJH_08735at 1790.064 kb on - strand, within OLJFJH_08735at 1790.074 kb on + strand, within OLJFJH_08735at 1790.074 kb on + strand, within OLJFJH_08735at 1790.075 kb on - strand, within OLJFJH_08735at 1790.114 kb on + strand, within OLJFJH_08735at 1790.317 kb on + strand, within OLJFJH_08735at 1790.318 kb on - strand, within OLJFJH_08735at 1790.318 kb on - strand, within OLJFJH_08735at 1790.318 kb on - strand, within OLJFJH_08735at 1790.318 kb on - strand, within OLJFJH_08735at 1790.318 kb on - strand, within OLJFJH_08735at 1790.318 kb on - strand, within OLJFJH_08735at 1790.318 kb on - strand, within OLJFJH_08735at 1790.417 kb on + strand, within OLJFJH_08735at 1790.513 kb on - strand, within OLJFJH_08735at 1790.513 kb on - strand, within OLJFJH_08735at 1790.555 kb on + strand, within OLJFJH_08735at 1790.555 kb on + strand, within OLJFJH_08735at 1790.555 kb on + strand, within OLJFJH_08735at 1790.555 kb on + strand, within OLJFJH_08735at 1790.556 kb on - strand, within OLJFJH_08735at 1790.556 kb on - strand, within OLJFJH_08735at 1790.595 kb on + strandat 1790.691 kb on + strandat 1790.691 kb on + strandat 1790.731 kb on - strandat 1790.740 kb on + strandat 1790.959 kb on + strand, within OLJFJH_08740at 1790.959 kb on + strand, within OLJFJH_08740at 1790.959 kb on + strand, within OLJFJH_08740at 1790.960 kb on - strand, within OLJFJH_08740at 1790.960 kb on - strand, within OLJFJH_08740at 1791.098 kb on + strand, within OLJFJH_08740at 1791.098 kb on + strand, within OLJFJH_08740at 1791.105 kb on + strand, within OLJFJH_08740at 1791.195 kb on + strand, within OLJFJH_08740at 1791.248 kb on - strand, within OLJFJH_08740at 1791.366 kb on + strandat 1791.380 kb on + strandat 1791.380 kb on + strandat 1791.380 kb on + strandat 1791.380 kb on + strandat 1791.381 kb on - strandat 1791.381 kb on - strandat 1791.521 kb on + strandat 1791.625 kb on + strandat 1791.732 kb on + strandat 1791.732 kb on + strandat 1791.742 kb on - strandat 1791.748 kb on - strandat 1791.784 kb on - strandat 1791.860 kb on + strand, within OLJFJH_08750at 1791.904 kb on - strand, within OLJFJH_08750at 1791.948 kb on + strand, within OLJFJH_08750at 1791.948 kb on + strand, within OLJFJH_08750at 1792.154 kb on - strandat 1792.155 kb on + strandat 1792.155 kb on + strandat 1792.155 kb on + strandat 1792.155 kb on + strandat 1792.156 kb on - strandat 1792.156 kb on - strandat 1792.156 kb on - strandat 1792.170 kb on + strandat 1792.170 kb on + strandat 1792.212 kb on + strandat 1792.217 kb on + strandat 1792.218 kb on - strandat 1792.254 kb on - strandat 1792.301 kb on - strandat 1792.361 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-8
remove
1,789,896 + OLJFJH_08735 0.35 -1.0
1,789,897 - OLJFJH_08735 0.35 -0.9
1,789,946 + OLJFJH_08735 0.39 -0.3
1,789,987 + OLJFJH_08735 0.43 -0.2
1,790,064 - OLJFJH_08735 0.49 +0.5
1,790,074 + OLJFJH_08735 0.50 -1.8
1,790,074 + OLJFJH_08735 0.50 +0.7
1,790,075 - OLJFJH_08735 0.50 -1.4
1,790,114 + OLJFJH_08735 0.53 -2.7
1,790,317 + OLJFJH_08735 0.69 -0.4
1,790,318 - OLJFJH_08735 0.69 +0.4
1,790,318 - OLJFJH_08735 0.69 -1.0
1,790,318 - OLJFJH_08735 0.69 -0.9
1,790,318 - OLJFJH_08735 0.69 -0.9
1,790,318 - OLJFJH_08735 0.69 -2.0
1,790,318 - OLJFJH_08735 0.69 +0.0
1,790,318 - OLJFJH_08735 0.69 -3.2
1,790,417 + OLJFJH_08735 0.77 -0.9
1,790,513 - OLJFJH_08735 0.85 -1.5
1,790,513 - OLJFJH_08735 0.85 -1.2
1,790,555 + OLJFJH_08735 0.89 -1.5
1,790,555 + OLJFJH_08735 0.89 +0.4
1,790,555 + OLJFJH_08735 0.89 -1.9
1,790,555 + OLJFJH_08735 0.89 -1.1
1,790,556 - OLJFJH_08735 0.89 -2.2
1,790,556 - OLJFJH_08735 0.89 -1.3
1,790,595 + -1.2
1,790,691 + -0.8
1,790,691 + +0.2
1,790,731 - -0.4
1,790,740 + -0.4
1,790,959 + OLJFJH_08740 0.29 -1.8
1,790,959 + OLJFJH_08740 0.29 -1.4
1,790,959 + OLJFJH_08740 0.29 -0.3
1,790,960 - OLJFJH_08740 0.29 -1.4
1,790,960 - OLJFJH_08740 0.29 -0.4
1,791,098 + OLJFJH_08740 0.52 +0.5
1,791,098 + OLJFJH_08740 0.52 -1.2
1,791,105 + OLJFJH_08740 0.53 +0.9
1,791,195 + OLJFJH_08740 0.69 -0.7
1,791,248 - OLJFJH_08740 0.78 -1.5
1,791,366 + -3.0
1,791,380 + +0.2
1,791,380 + +0.7
1,791,380 + -0.1
1,791,380 + -0.4
1,791,381 - +0.6
1,791,381 - +0.6
1,791,521 + -0.1
1,791,625 + -1.1
1,791,732 + +0.8
1,791,732 + -0.4
1,791,742 - -0.2
1,791,748 - -0.5
1,791,784 - +0.3
1,791,860 + OLJFJH_08750 0.32 -1.7
1,791,904 - OLJFJH_08750 0.45 +0.2
1,791,948 + OLJFJH_08750 0.59 -1.4
1,791,948 + OLJFJH_08750 0.59 +0.0
1,792,154 - +0.3
1,792,155 + -0.4
1,792,155 + -0.3
1,792,155 + +0.2
1,792,155 + +1.4
1,792,156 - +0.2
1,792,156 - -0.8
1,792,156 - -0.1
1,792,170 + -1.3
1,792,170 + +0.0
1,792,212 + +1.3
1,792,217 + +0.4
1,792,218 - +0.5
1,792,254 - +1.4
1,792,301 - -0.7
1,792,361 - +0.3

Or see this region's nucleotide sequence