Strain Fitness in Erwinia amylovora T8 around OLJFJH_05180

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_05170 and OLJFJH_05175 are separated by 50 nucleotidesOLJFJH_05175 and OLJFJH_05180 overlap by 37 nucleotidesOLJFJH_05180 and OLJFJH_05185 are separated by 18 nucleotides OLJFJH_05170: OLJFJH_05170 - 50S ribosomal protein L34, at 1,029,188 to 1,029,328 _05170 OLJFJH_05175: OLJFJH_05175 - ribonuclease P protein component, at 1,029,379 to 1,029,705 _05175 OLJFJH_05180: OLJFJH_05180 - membrane protein insertion efficiency factor YidD, at 1,029,669 to 1,029,911 _05180 OLJFJH_05185: OLJFJH_05185 - membrane protein insertase YidC, at 1,029,930 to 1,031,576 _05185 Position (kb) 1029 1030Strain fitness (log2 ratio) -1 0 1at 1028.777 kb on + strandat 1028.777 kb on + strandat 1028.822 kb on + strandat 1028.828 kb on + strandat 1028.969 kb on + strandat 1029.820 kb on + strand, within OLJFJH_05180

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-8
remove
1,028,777 + +0.1
1,028,777 + -0.5
1,028,822 + +0.2
1,028,828 + +0.6
1,028,969 + +0.0
1,029,820 + OLJFJH_05180 0.62 -1.0

Or see this region's nucleotide sequence