Strain Fitness in Erwinia amylovora T8 around OLJFJH_00955

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_00945 and OLJFJH_00950 overlap by 1 nucleotidesOLJFJH_00950 and OLJFJH_00955 are separated by 46 nucleotidesOLJFJH_00955 and OLJFJH_00960 are separated by 40 nucleotidesOLJFJH_00960 and OLJFJH_00965 are separated by 10 nucleotides OLJFJH_00945: OLJFJH_00945 - AMP-dependent synthetase, at 113,365 to 114,864 _00945 OLJFJH_00950: OLJFJH_00950 - acyl-CoA thioesterase, at 114,864 to 115,298 _00950 OLJFJH_00955: OLJFJH_00955 - Zn-dependent oxidoreductase, at 115,345 to 116,331 _00955 OLJFJH_00960: OLJFJH_00960 - biotin transporter BioY, at 116,372 to 116,911 _00960 OLJFJH_00965: OLJFJH_00965 - energy-coupling factor transporter transmembrane protein EcfT, at 116,922 to 117,539 _00965 Position (kb) 115 116 117Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 114.346 kb on - strand, within OLJFJH_00945at 114.589 kb on + strand, within OLJFJH_00945at 114.681 kb on + strand, within OLJFJH_00945at 114.681 kb on + strand, within OLJFJH_00945at 114.881 kb on + strandat 114.939 kb on - strand, within OLJFJH_00950at 114.939 kb on - strand, within OLJFJH_00950at 115.029 kb on + strand, within OLJFJH_00950at 115.129 kb on + strand, within OLJFJH_00950at 115.129 kb on + strand, within OLJFJH_00950at 115.129 kb on + strand, within OLJFJH_00950at 115.211 kb on - strand, within OLJFJH_00950at 115.215 kb on + strand, within OLJFJH_00950at 115.215 kb on + strand, within OLJFJH_00950at 115.229 kb on + strand, within OLJFJH_00950at 115.230 kb on - strand, within OLJFJH_00950at 115.342 kb on - strandat 115.358 kb on + strandat 115.514 kb on - strand, within OLJFJH_00955at 115.514 kb on - strand, within OLJFJH_00955at 115.524 kb on + strand, within OLJFJH_00955at 115.524 kb on + strand, within OLJFJH_00955at 115.525 kb on - strand, within OLJFJH_00955at 115.645 kb on + strand, within OLJFJH_00955at 115.646 kb on - strand, within OLJFJH_00955at 115.717 kb on + strand, within OLJFJH_00955at 115.843 kb on - strand, within OLJFJH_00955at 116.058 kb on + strand, within OLJFJH_00955at 116.251 kb on + strandat 116.529 kb on + strand, within OLJFJH_00960at 116.529 kb on + strand, within OLJFJH_00960at 116.530 kb on - strand, within OLJFJH_00960at 116.589 kb on + strand, within OLJFJH_00960at 116.669 kb on - strand, within OLJFJH_00960at 116.889 kb on + strandat 116.889 kb on + strandat 116.890 kb on - strandat 116.896 kb on + strandat 116.911 kb on + strandat 116.911 kb on + strandat 116.911 kb on + strandat 116.912 kb on - strandat 116.915 kb on + strandat 116.916 kb on - strandat 116.916 kb on - strandat 116.916 kb on - strandat 116.930 kb on + strandat 116.930 kb on + strandat 116.930 kb on + strandat 116.931 kb on - strandat 117.101 kb on + strand, within OLJFJH_00965at 117.155 kb on + strand, within OLJFJH_00965at 117.155 kb on + strand, within OLJFJH_00965at 117.155 kb on + strand, within OLJFJH_00965at 117.156 kb on - strand, within OLJFJH_00965at 117.157 kb on + strand, within OLJFJH_00965at 117.157 kb on + strand, within OLJFJH_00965at 117.157 kb on + strand, within OLJFJH_00965at 117.157 kb on + strand, within OLJFJH_00965at 117.157 kb on + strand, within OLJFJH_00965at 117.157 kb on + strand, within OLJFJH_00965at 117.158 kb on - strand, within OLJFJH_00965at 117.158 kb on - strand, within OLJFJH_00965at 117.158 kb on - strand, within OLJFJH_00965at 117.158 kb on - strand, within OLJFJH_00965at 117.158 kb on - strand, within OLJFJH_00965at 117.258 kb on + strand, within OLJFJH_00965at 117.259 kb on - strand, within OLJFJH_00965at 117.259 kb on - strand, within OLJFJH_00965

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-8
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114,346 - OLJFJH_00945 0.65 +0.2
114,589 + OLJFJH_00945 0.82 -0.3
114,681 + OLJFJH_00945 0.88 +0.1
114,681 + OLJFJH_00945 0.88 +0.6
114,881 + +1.0
114,939 - OLJFJH_00950 0.17 +0.2
114,939 - OLJFJH_00950 0.17 -0.2
115,029 + OLJFJH_00950 0.38 -1.0
115,129 + OLJFJH_00950 0.61 +2.4
115,129 + OLJFJH_00950 0.61 +0.4
115,129 + OLJFJH_00950 0.61 +0.5
115,211 - OLJFJH_00950 0.80 -1.1
115,215 + OLJFJH_00950 0.81 +0.2
115,215 + OLJFJH_00950 0.81 -0.3
115,229 + OLJFJH_00950 0.84 -0.4
115,230 - OLJFJH_00950 0.84 -0.9
115,342 - -0.3
115,358 + +1.0
115,514 - OLJFJH_00955 0.17 -3.7
115,514 - OLJFJH_00955 0.17 -1.2
115,524 + OLJFJH_00955 0.18 -1.9
115,524 + OLJFJH_00955 0.18 -1.7
115,525 - OLJFJH_00955 0.18 -1.5
115,645 + OLJFJH_00955 0.30 -2.1
115,646 - OLJFJH_00955 0.30 -1.6
115,717 + OLJFJH_00955 0.38 -0.9
115,843 - OLJFJH_00955 0.50 -0.5
116,058 + OLJFJH_00955 0.72 -1.0
116,251 + -1.5
116,529 + OLJFJH_00960 0.29 -0.9
116,529 + OLJFJH_00960 0.29 +1.9
116,530 - OLJFJH_00960 0.29 -0.0
116,589 + OLJFJH_00960 0.40 -0.0
116,669 - OLJFJH_00960 0.55 +0.6
116,889 + -0.7
116,889 + +0.2
116,890 - -0.7
116,896 + +0.3
116,911 + -2.2
116,911 + -0.7
116,911 + -0.2
116,912 - -0.5
116,915 + +0.2
116,916 - -0.0
116,916 - +0.3
116,916 - -0.5
116,930 + -0.5
116,930 + -0.9
116,930 + -0.1
116,931 - -0.7
117,101 + OLJFJH_00965 0.29 -0.1
117,155 + OLJFJH_00965 0.38 -1.3
117,155 + OLJFJH_00965 0.38 +1.9
117,155 + OLJFJH_00965 0.38 +0.4
117,156 - OLJFJH_00965 0.38 -0.3
117,157 + OLJFJH_00965 0.38 -0.1
117,157 + OLJFJH_00965 0.38 -0.6
117,157 + OLJFJH_00965 0.38 +1.1
117,157 + OLJFJH_00965 0.38 +2.9
117,157 + OLJFJH_00965 0.38 +0.0
117,157 + OLJFJH_00965 0.38 +0.4
117,158 - OLJFJH_00965 0.38 -0.2
117,158 - OLJFJH_00965 0.38 +0.4
117,158 - OLJFJH_00965 0.38 -0.1
117,158 - OLJFJH_00965 0.38 -1.3
117,158 - OLJFJH_00965 0.38 +1.4
117,258 + OLJFJH_00965 0.54 +0.6
117,259 - OLJFJH_00965 0.55 -0.3
117,259 - OLJFJH_00965 0.55 +0.9

Or see this region's nucleotide sequence