Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_00865 and OLJFJH_00870 overlap by 4 nucleotides OLJFJH_00870 and OLJFJH_00875 overlap by 4 nucleotides
OLJFJH_00865: OLJFJH_00865 - winged helix-turn-helix domain-containing protein, at 93,980 to 94,468
_00865
OLJFJH_00870: OLJFJH_00870 - protein rcaC, at 94,465 to 94,731
_00870
OLJFJH_00875: OLJFJH_00875 - hypothetical protein, at 94,728 to 95,198
_00875
Position (kb)
94
95
96 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 94.223 kb on - strand, within OLJFJH_00865 at 94.268 kb on + strand, within OLJFJH_00865 at 94.268 kb on + strand, within OLJFJH_00865 at 94.271 kb on - strand, within OLJFJH_00865 at 94.271 kb on - strand, within OLJFJH_00865 at 94.339 kb on - strand, within OLJFJH_00865 at 94.353 kb on - strand, within OLJFJH_00865 at 94.360 kb on + strand, within OLJFJH_00865 at 94.382 kb on - strand, within OLJFJH_00865 at 94.581 kb on + strand, within OLJFJH_00870 at 94.802 kb on - strand, within OLJFJH_00875 at 95.088 kb on - strand, within OLJFJH_00875 at 95.125 kb on + strand, within OLJFJH_00875 at 95.183 kb on + strand at 95.196 kb on + strand at 95.199 kb on + strand at 95.199 kb on + strand at 95.216 kb on + strand at 95.307 kb on + strand at 95.359 kb on + strand at 95.402 kb on + strand at 95.461 kb on - strand at 95.517 kb on - strand at 95.517 kb on - strand at 95.665 kb on - strand at 95.778 kb on + strand at 95.778 kb on + strand at 95.779 kb on - strand at 95.779 kb on - strand at 95.779 kb on - strand at 95.899 kb on + strand at 95.900 kb on - strand at 95.964 kb on + strand at 95.965 kb on - strand at 95.965 kb on - strand at 96.007 kb on + strand at 96.084 kb on + strand at 96.113 kb on + strand at 96.189 kb on + strand at 96.190 kb on - strand at 96.190 kb on - strand at 96.190 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-8 remove 94,223 - OLJFJH_00865 0.50 -0.3 94,268 + OLJFJH_00865 0.59 -1.0 94,268 + OLJFJH_00865 0.59 -0.9 94,271 - OLJFJH_00865 0.60 +0.8 94,271 - OLJFJH_00865 0.60 +0.1 94,339 - OLJFJH_00865 0.73 -0.5 94,353 - OLJFJH_00865 0.76 +0.2 94,360 + OLJFJH_00865 0.78 +0.8 94,382 - OLJFJH_00865 0.82 +0.1 94,581 + OLJFJH_00870 0.43 -2.2 94,802 - OLJFJH_00875 0.16 -1.1 95,088 - OLJFJH_00875 0.76 -0.9 95,125 + OLJFJH_00875 0.84 -0.7 95,183 + +0.2 95,196 + -0.6 95,199 + -1.3 95,199 + +1.4 95,216 + -0.1 95,307 + -0.1 95,359 + -0.7 95,402 + +1.1 95,461 - +0.3 95,517 - -0.9 95,517 - -0.3 95,665 - -0.0 95,778 + +0.1 95,778 + -0.1 95,779 - +0.3 95,779 - +2.1 95,779 - -1.6 95,899 + +0.3 95,900 - -1.1 95,964 + -0.1 95,965 - +1.0 95,965 - -0.2 96,007 + -0.3 96,084 + -0.3 96,113 + +0.8 96,189 + +1.6 96,190 - +1.0 96,190 - +0.3 96,190 - -0.1
Or see this region's nucleotide sequence