Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28530

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnarX and OKFHMN_28530 are separated by 25 nucleotidesOKFHMN_28530 and narK are separated by 94 nucleotides OKFHMN_28525: narX - nitrate/nitrite two-component system sensor histidine kinase NarX, at 5,469,785 to 5,471,581 narX OKFHMN_28530: OKFHMN_28530 - hypothetical protein, at 5,471,607 to 5,471,825 _28530 OKFHMN_28535: narK - nitrate transporter NarK, at 5,471,920 to 5,473,311 narK Position (kb) 5471 5472Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 5471.410 kb on - strandat 5471.530 kb on + strandat 5471.546 kb on - strandat 5471.576 kb on - strandat 5471.584 kb on - strandat 5471.729 kb on + strand, within OKFHMN_28530at 5472.551 kb on - strand, within narKat 5472.551 kb on - strand, within narKat 5472.797 kb on - strand, within narK

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,471,410 - -2.3
5,471,530 + -6.2
5,471,546 - +0.4
5,471,576 - -0.3
5,471,584 - +0.1
5,471,729 + OKFHMN_28530 0.56 -0.0
5,472,551 - narK OKFHMN_28535 0.45 -1.3
5,472,551 - narK OKFHMN_28535 0.45 +0.5
5,472,797 - narK OKFHMN_28535 0.63 +0.9

Or see this region's nucleotide sequence