Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28315

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttnp-IS3 and OKFHMN_28310 overlap by 35 nucleotidesOKFHMN_28310 and nhaP2 are separated by 102 nucleotidesnhaP2 and ldcA are separated by 95 nucleotides OKFHMN_28305: tnp-IS3 - IS3 family transposase, at 5,429,434 to 5,430,321 tnp-IS3 OKFHMN_28310: OKFHMN_28310 - AMP nucleosidase, at 5,430,287 to 5,430,376 _28310 OKFHMN_28315: nhaP2 - potassium/proton antiporter, at 5,430,479 to 5,432,215 nhaP2 OKFHMN_28320: ldcA - muramoyltetrapeptide carboxypeptidase, at 5,432,311 to 5,433,225 ldcA Position (kb) 5430 5431 5432 5433Strain fitness (log2 ratio) -2 -1 0 1at 5430.416 kb on + strandat 5430.416 kb on + strandat 5430.533 kb on - strandat 5430.676 kb on - strand, within nhaP2at 5430.678 kb on - strand, within nhaP2at 5430.868 kb on + strand, within nhaP2at 5430.907 kb on + strand, within nhaP2at 5431.913 kb on - strand, within nhaP2at 5432.025 kb on - strand, within nhaP2at 5432.048 kb on - strandat 5432.117 kb on - strandat 5432.251 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
5,430,416 + +0.2
5,430,416 + -0.9
5,430,533 - -0.0
5,430,676 - nhaP2 OKFHMN_28315 0.11 -1.7
5,430,678 - nhaP2 OKFHMN_28315 0.11 +0.0
5,430,868 + nhaP2 OKFHMN_28315 0.22 +0.4
5,430,907 + nhaP2 OKFHMN_28315 0.25 -1.7
5,431,913 - nhaP2 OKFHMN_28315 0.83 -2.7
5,432,025 - nhaP2 OKFHMN_28315 0.89 +1.4
5,432,048 - +1.0
5,432,117 - -0.2
5,432,251 - -0.2

Or see this region's nucleotide sequence