Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27775

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbisC and ynfE are separated by 87 nucleotidesynfE and OKFHMN_27780 are separated by 198 nucleotidesOKFHMN_27780 and ynfC are separated by 71 nucleotides OKFHMN_27770: bisC - dimethyl sulfoxide reductase subunit A, at 5,347,639 to 5,350,035 bisC OKFHMN_27775: ynfE - Putative dimethyl sulfoxide reductase chain YnfE, at 5,350,123 to 5,352,549 ynfE OKFHMN_27780: OKFHMN_27780 - DUF1161 domain-containing protein, at 5,352,748 to 5,353,053 _27780 OKFHMN_27785: ynfC - YnfC family lipoprotein, at 5,353,125 to 5,353,871 ynfC Position (kb) 5350 5351 5352 5353Strain fitness (log2 ratio) -2 -1 0 1 2at 5349.274 kb on - strand, within bisCat 5349.335 kb on + strand, within bisCat 5349.336 kb on - strand, within bisCat 5349.448 kb on - strand, within bisCat 5349.590 kb on - strand, within bisCat 5350.074 kb on + strandat 5350.109 kb on - strandat 5350.243 kb on - strandat 5350.388 kb on - strand, within ynfEat 5350.969 kb on - strand, within ynfEat 5351.155 kb on - strand, within ynfEat 5351.293 kb on + strand, within ynfEat 5352.664 kb on - strandat 5352.671 kb on + strandat 5352.680 kb on + strandat 5352.698 kb on + strandat 5352.698 kb on + strandat 5352.908 kb on - strand, within OKFHMN_27780at 5352.958 kb on - strand, within OKFHMN_27780at 5353.514 kb on - strand, within ynfC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,349,274 - bisC OKFHMN_27770 0.68 -0.4
5,349,335 + bisC OKFHMN_27770 0.71 +0.9
5,349,336 - bisC OKFHMN_27770 0.71 +0.7
5,349,448 - bisC OKFHMN_27770 0.75 -0.5
5,349,590 - bisC OKFHMN_27770 0.81 +1.8
5,350,074 + -0.7
5,350,109 - +0.3
5,350,243 - -0.6
5,350,388 - ynfE OKFHMN_27775 0.11 +0.0
5,350,969 - ynfE OKFHMN_27775 0.35 -0.3
5,351,155 - ynfE OKFHMN_27775 0.43 -0.5
5,351,293 + ynfE OKFHMN_27775 0.48 +0.3
5,352,664 - -0.3
5,352,671 + +1.2
5,352,680 + -2.1
5,352,698 + +0.5
5,352,698 + -0.9
5,352,908 - OKFHMN_27780 0.52 -0.2
5,352,958 - OKFHMN_27780 0.69 -0.3
5,353,514 - ynfC OKFHMN_27785 0.52 +0.1

Or see this region's nucleotide sequence