Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27685

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydgI and ydgH are separated by 185 nucleotidesydgH and pntA are separated by 523 nucleotides OKFHMN_27680: ydgI - Putative arginine/ornithine antiporter, at 5,329,680 to 5,331,062 ydgI OKFHMN_27685: ydgH - DUF1471 domain-containing protein, at 5,331,248 to 5,332,192 ydgH OKFHMN_27690: pntA - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 5,332,716 to 5,334,248 pntA Position (kb) 5331 5332 5333Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5330.385 kb on - strand, within ydgIat 5330.388 kb on - strand, within ydgIat 5330.653 kb on - strand, within ydgIat 5330.685 kb on - strand, within ydgIat 5330.688 kb on - strand, within ydgIat 5330.688 kb on - strand, within ydgIat 5330.928 kb on - strandat 5331.078 kb on - strandat 5331.151 kb on + strandat 5331.232 kb on - strandat 5331.238 kb on - strandat 5331.249 kb on + strandat 5331.662 kb on - strand, within ydgHat 5332.183 kb on + strandat 5332.184 kb on - strandat 5332.199 kb on - strandat 5332.225 kb on - strandat 5332.231 kb on - strandat 5332.237 kb on - strandat 5332.260 kb on - strandat 5332.278 kb on - strandat 5332.345 kb on - strandat 5332.376 kb on - strandat 5332.420 kb on - strandat 5332.471 kb on + strandat 5332.494 kb on - strandat 5332.592 kb on + strandat 5332.639 kb on + strandat 5332.819 kb on + strandat 5332.991 kb on + strand, within pntAat 5333.104 kb on + strand, within pntA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,330,385 - ydgI OKFHMN_27680 0.51 +2.4
5,330,388 - ydgI OKFHMN_27680 0.51 +0.1
5,330,653 - ydgI OKFHMN_27680 0.70 +1.6
5,330,685 - ydgI OKFHMN_27680 0.73 -0.2
5,330,688 - ydgI OKFHMN_27680 0.73 +0.6
5,330,688 - ydgI OKFHMN_27680 0.73 -1.3
5,330,928 - -0.2
5,331,078 - +0.6
5,331,151 + +1.0
5,331,232 - -1.3
5,331,238 - +0.2
5,331,249 + -0.1
5,331,662 - ydgH OKFHMN_27685 0.44 +0.6
5,332,183 + -0.6
5,332,184 - -1.1
5,332,199 - +0.1
5,332,225 - +0.8
5,332,231 - +0.5
5,332,237 - +0.4
5,332,260 - +0.3
5,332,278 - +0.7
5,332,345 - -0.4
5,332,376 - +0.2
5,332,420 - -1.4
5,332,471 + +1.3
5,332,494 - +1.1
5,332,592 + -0.0
5,332,639 + +0.3
5,332,819 + -3.1
5,332,991 + pntA OKFHMN_27690 0.18 -1.3
5,333,104 + pntA OKFHMN_27690 0.25 -0.8

Or see this region's nucleotide sequence