Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yobB and holE are separated by 101 nucleotides holE and yobA are separated by 138 nucleotides yobA and copD are separated by 3 nucleotides copD and yebY are separated by 12 nucleotides
OKFHMN_26390: yobB - Uncharacterized protein YobB, at 5,082,492 to 5,083,148
yobB
OKFHMN_26395: holE - DNA polymerase III subunit theta, at 5,083,250 to 5,083,480
holE
OKFHMN_26400: yobA - CopC domain-containing protein YobA, at 5,083,619 to 5,083,993
yobA
OKFHMN_26405: copD - copper homeostasis membrane protein CopD, at 5,083,997 to 5,084,869
copD
OKFHMN_26410: yebY - Uncharacterized protein YebY, at 5,084,882 to 5,085,223
yebY
Position (kb) 5083
5084 Strain fitness (log2 ratio) -1
0
1
2
3 at 5082.823 kb on + strand, within yobB at 5083.149 kb on - strand at 5083.180 kb on - strand at 5083.270 kb on - strand at 5083.275 kb on - strand, within holE at 5083.389 kb on + strand, within holE at 5083.399 kb on + strand, within holE at 5083.399 kb on + strand, within holE at 5083.579 kb on - strand at 5083.618 kb on + strand at 5083.835 kb on - strand, within yobA at 5083.957 kb on + strand at 5083.958 kb on - strand at 5084.073 kb on - strand at 5084.223 kb on + strand, within copD at 5084.443 kb on + strand, within copD at 5084.660 kb on + strand, within copD at 5084.660 kb on + strand, within copD at 5084.661 kb on - strand, within copD at 5084.661 kb on - strand, within copD at 5084.705 kb on - strand, within copD at 5084.726 kb on - strand, within copD
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 5,082,823 + yobB OKFHMN_26390 0.50 +3.0 5,083,149 - +1.9 5,083,180 - -0.8 5,083,270 - +0.1 5,083,275 - holE OKFHMN_26395 0.11 +0.8 5,083,389 + holE OKFHMN_26395 0.60 -0.5 5,083,399 + holE OKFHMN_26395 0.65 +0.4 5,083,399 + holE OKFHMN_26395 0.65 -0.3 5,083,579 - +0.2 5,083,618 + -0.4 5,083,835 - yobA OKFHMN_26400 0.58 -1.0 5,083,957 + +1.6 5,083,958 - +0.1 5,084,073 - -1.1 5,084,223 + copD OKFHMN_26405 0.26 +0.3 5,084,443 + copD OKFHMN_26405 0.51 +0.3 5,084,660 + copD OKFHMN_26405 0.76 -0.3 5,084,660 + copD OKFHMN_26405 0.76 +0.3 5,084,661 - copD OKFHMN_26405 0.76 +0.3 5,084,661 - copD OKFHMN_26405 0.76 -0.0 5,084,705 - copD OKFHMN_26405 0.81 -0.6 5,084,726 - copD OKFHMN_26405 0.84 -1.6
Or see this region's nucleotide sequence