Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25705

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliI and fliH overlap by 1 nucleotidesfliH and fliG overlap by 8 nucleotidesfliG and fliF overlap by 8 nucleotides OKFHMN_25700: fliI - flagellum-specific ATP synthase FliI, at 4,968,651 to 4,970,024 fliI OKFHMN_25705: fliH - flagellar assembly protein FliH, at 4,970,024 to 4,970,710 fliH OKFHMN_25710: fliG - flagellar motor switch protein FliG, at 4,970,703 to 4,971,698 fliG OKFHMN_25715: fliF - flagellar M-ring protein FliF, at 4,971,691 to 4,973,349 fliF Position (kb) 4970 4971Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4969.038 kb on - strand, within fliIat 4969.215 kb on - strand, within fliIat 4969.569 kb on - strand, within fliIat 4969.674 kb on + strand, within fliIat 4970.026 kb on - strandat 4970.026 kb on - strandat 4970.169 kb on - strand, within fliHat 4970.364 kb on - strand, within fliHat 4970.507 kb on - strand, within fliHat 4970.711 kb on - strandat 4970.711 kb on - strandat 4970.714 kb on + strandat 4970.734 kb on - strandat 4971.363 kb on - strand, within fliGat 4971.544 kb on - strand, within fliG

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,969,038 - fliI OKFHMN_25700 0.28 -1.0
4,969,215 - fliI OKFHMN_25700 0.41 +3.2
4,969,569 - fliI OKFHMN_25700 0.67 +1.5
4,969,674 + fliI OKFHMN_25700 0.74 -0.9
4,970,026 - +0.9
4,970,026 - -0.7
4,970,169 - fliH OKFHMN_25705 0.21 +0.5
4,970,364 - fliH OKFHMN_25705 0.49 +0.4
4,970,507 - fliH OKFHMN_25705 0.70 +1.5
4,970,711 - +0.2
4,970,711 - -0.4
4,970,714 + -2.0
4,970,734 - -0.3
4,971,363 - fliG OKFHMN_25710 0.66 +1.0
4,971,544 - fliG OKFHMN_25710 0.84 -0.4

Or see this region's nucleotide sequence