Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yedQ and yedP overlap by 4 nucleotides yedP and yodD are separated by 297 nucleotides yodD and dsrB are separated by 162 nucleotides dsrB and rcsA are separated by 43 nucleotides
OKFHMN_25625: yedQ - cellulose biosynthesis regulator YedQ, at 4,958,566 to 4,960,260
yedQ
OKFHMN_25630: yedP - mannosyl-3-phosphoglycerate phosphatase-related protein, at 4,960,257 to 4,961,072
yedP
OKFHMN_25640: yodD - YodD family peroxide/acid resistance protein, at 4,961,370 to 4,961,597
yodD
OKFHMN_25645: dsrB - protein DsrB, at 4,961,760 to 4,961,948
dsrB
OKFHMN_25650: rcsA - transcriptional regulator RcsA, at 4,961,992 to 4,962,615
rcsA
Position (kb) 4960
4961
4962 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4959.304 kb on - strand, within yedQ at 4959.307 kb on - strand, within yedQ at 4959.352 kb on - strand, within yedQ at 4959.352 kb on - strand, within yedQ at 4959.418 kb on - strand, within yedQ at 4959.547 kb on + strand, within yedQ at 4959.605 kb on + strand, within yedQ at 4959.727 kb on + strand, within yedQ at 4959.728 kb on - strand, within yedQ at 4959.782 kb on + strand, within yedQ at 4959.784 kb on + strand, within yedQ at 4960.062 kb on + strand, within yedQ at 4960.144 kb on - strand at 4960.372 kb on - strand, within yedP at 4960.557 kb on - strand, within yedP at 4961.003 kb on - strand at 4961.007 kb on - strand at 4961.442 kb on - strand, within yodD at 4961.662 kb on - strand at 4961.668 kb on - strand at 4961.668 kb on - strand at 4961.729 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,959,304 - yedQ OKFHMN_25625 0.44 +0.2 4,959,307 - yedQ OKFHMN_25625 0.44 +0.2 4,959,352 - yedQ OKFHMN_25625 0.46 -0.1 4,959,352 - yedQ OKFHMN_25625 0.46 +2.4 4,959,418 - yedQ OKFHMN_25625 0.50 -0.6 4,959,547 + yedQ OKFHMN_25625 0.58 +0.9 4,959,605 + yedQ OKFHMN_25625 0.61 +0.4 4,959,727 + yedQ OKFHMN_25625 0.68 -0.5 4,959,728 - yedQ OKFHMN_25625 0.69 +1.0 4,959,782 + yedQ OKFHMN_25625 0.72 +0.7 4,959,784 + yedQ OKFHMN_25625 0.72 -1.9 4,960,062 + yedQ OKFHMN_25625 0.88 -2.0 4,960,144 - +0.3 4,960,372 - yedP OKFHMN_25630 0.14 +0.6 4,960,557 - yedP OKFHMN_25630 0.37 -0.8 4,961,003 - +1.1 4,961,007 - +0.1 4,961,442 - yodD OKFHMN_25640 0.32 -0.2 4,961,662 - +3.6 4,961,668 - -1.4 4,961,668 - +0.4 4,961,729 + +0.4
Or see this region's nucleotide sequence