Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24405

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_24400 and galF are separated by 242 nucleotidesgalF and wcaA are separated by 318 nucleotides OKFHMN_24400: OKFHMN_24400 - N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase, at 4,766,070 to 4,767,065 _24400 OKFHMN_24405: galF - UTP--glucose-1-phosphate uridylyltransferase GalF, at 4,767,308 to 4,768,201 galF OKFHMN_24410: wcaA - glycosyl transferase, at 4,768,520 to 4,769,302 wcaA Position (kb) 4767 4768 4769Strain fitness (log2 ratio) -2 -1 0 1at 4766.310 kb on + strand, within OKFHMN_24400at 4766.310 kb on + strand, within OKFHMN_24400at 4766.511 kb on - strand, within OKFHMN_24400at 4766.536 kb on + strand, within OKFHMN_24400at 4766.540 kb on + strand, within OKFHMN_24400at 4766.559 kb on - strand, within OKFHMN_24400at 4766.591 kb on + strand, within OKFHMN_24400at 4766.591 kb on + strand, within OKFHMN_24400at 4766.591 kb on + strand, within OKFHMN_24400at 4766.645 kb on + strand, within OKFHMN_24400at 4766.651 kb on + strand, within OKFHMN_24400at 4766.664 kb on + strand, within OKFHMN_24400at 4766.664 kb on + strand, within OKFHMN_24400at 4766.664 kb on + strand, within OKFHMN_24400at 4766.687 kb on + strand, within OKFHMN_24400at 4766.813 kb on + strand, within OKFHMN_24400at 4766.813 kb on + strand, within OKFHMN_24400at 4766.813 kb on + strand, within OKFHMN_24400at 4767.046 kb on + strandat 4767.063 kb on + strandat 4767.141 kb on - strandat 4767.187 kb on + strandat 4767.225 kb on + strandat 4767.237 kb on + strandat 4767.237 kb on + strandat 4767.239 kb on + strandat 4767.328 kb on + strandat 4767.355 kb on + strandat 4767.355 kb on + strandat 4767.573 kb on + strand, within galFat 4767.580 kb on + strand, within galFat 4767.580 kb on + strand, within galFat 4767.950 kb on + strand, within galFat 4768.012 kb on + strand, within galFat 4768.112 kb on + strandat 4768.141 kb on - strandat 4768.307 kb on + strandat 4768.336 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,766,310 + OKFHMN_24400 0.24 +1.3
4,766,310 + OKFHMN_24400 0.24 +0.3
4,766,511 - OKFHMN_24400 0.44 +0.6
4,766,536 + OKFHMN_24400 0.47 +0.6
4,766,540 + OKFHMN_24400 0.47 +1.1
4,766,559 - OKFHMN_24400 0.49 +0.5
4,766,591 + OKFHMN_24400 0.52 +1.2
4,766,591 + OKFHMN_24400 0.52 +1.0
4,766,591 + OKFHMN_24400 0.52 +1.1
4,766,645 + OKFHMN_24400 0.58 +0.7
4,766,651 + OKFHMN_24400 0.58 +0.6
4,766,664 + OKFHMN_24400 0.60 +0.6
4,766,664 + OKFHMN_24400 0.60 +0.5
4,766,664 + OKFHMN_24400 0.60 +1.3
4,766,687 + OKFHMN_24400 0.62 +1.4
4,766,813 + OKFHMN_24400 0.75 +0.2
4,766,813 + OKFHMN_24400 0.75 +1.4
4,766,813 + OKFHMN_24400 0.75 +0.6
4,767,046 + +0.8
4,767,063 + -0.4
4,767,141 - -2.7
4,767,187 + +0.4
4,767,225 + +0.7
4,767,237 + +0.4
4,767,237 + -0.0
4,767,239 + +0.9
4,767,328 + +0.4
4,767,355 + -1.3
4,767,355 + +0.6
4,767,573 + galF OKFHMN_24405 0.30 +0.3
4,767,580 + galF OKFHMN_24405 0.30 -1.1
4,767,580 + galF OKFHMN_24405 0.30 +1.3
4,767,950 + galF OKFHMN_24405 0.72 -1.8
4,768,012 + galF OKFHMN_24405 0.79 -1.3
4,768,112 + +0.2
4,768,141 - +0.4
4,768,307 + -2.3
4,768,336 + +1.1

Or see this region's nucleotide sequence