Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24295

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntasmA and OKFHMN_24285 are separated by 52 nucleotidesOKFHMN_24285 and OKFHMN_24290 overlap by 11 nucleotidesOKFHMN_24290 and tlyC are separated by 74 nucleotidestlyC and wza are separated by 658 nucleotides OKFHMN_24280: asmA - outer membrane assembly protein AsmA, at 4,738,335 to 4,740,188 asmA OKFHMN_24285: OKFHMN_24285 - transcriptional regulator, at 4,740,241 to 4,740,531 _24285 OKFHMN_24290: OKFHMN_24290 - Addiction module toxin RelE, at 4,740,521 to 4,740,859 _24290 OKFHMN_24295: tlyC - Integral membrane protein TerC family, at 4,740,934 to 4,742,517 tlyC OKFHMN_24300: wza - polysaccharide export protein Wza, at 4,743,176 to 4,744,315 wza Position (kb) 4740 4741 4742 4743Strain fitness (log2 ratio) -1 0 1 2 3at 4740.091 kb on + strandat 4740.091 kb on + strandat 4740.196 kb on + strandat 4740.196 kb on + strandat 4740.198 kb on + strandat 4740.200 kb on + strandat 4740.237 kb on - strandat 4740.271 kb on - strand, within OKFHMN_24285at 4740.280 kb on - strand, within OKFHMN_24285at 4740.280 kb on - strand, within OKFHMN_24285at 4740.280 kb on - strand, within OKFHMN_24285at 4740.280 kb on - strand, within OKFHMN_24285at 4740.284 kb on - strand, within OKFHMN_24285at 4740.657 kb on + strand, within OKFHMN_24290at 4740.658 kb on - strand, within OKFHMN_24290at 4740.658 kb on - strand, within OKFHMN_24290at 4740.658 kb on - strand, within OKFHMN_24290at 4740.670 kb on - strand, within OKFHMN_24290at 4740.976 kb on - strandat 4741.028 kb on + strandat 4741.140 kb on - strand, within tlyCat 4741.244 kb on - strand, within tlyCat 4741.363 kb on + strand, within tlyCat 4741.633 kb on - strand, within tlyCat 4741.669 kb on - strand, within tlyCat 4741.771 kb on - strand, within tlyCat 4742.057 kb on - strand, within tlyCat 4742.173 kb on - strand, within tlyCat 4742.351 kb on - strand, within tlyCat 4742.440 kb on - strandat 4742.521 kb on - strandat 4742.525 kb on - strandat 4742.604 kb on - strandat 4742.617 kb on + strandat 4742.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,740,091 + -0.9
4,740,091 + -0.1
4,740,196 + +0.6
4,740,196 + -0.7
4,740,198 + +0.8
4,740,200 + +0.4
4,740,237 - -0.6
4,740,271 - OKFHMN_24285 0.10 +0.3
4,740,280 - OKFHMN_24285 0.13 -0.7
4,740,280 - OKFHMN_24285 0.13 +0.5
4,740,280 - OKFHMN_24285 0.13 +0.6
4,740,280 - OKFHMN_24285 0.13 -0.1
4,740,284 - OKFHMN_24285 0.15 -0.0
4,740,657 + OKFHMN_24290 0.40 -0.5
4,740,658 - OKFHMN_24290 0.40 +1.0
4,740,658 - OKFHMN_24290 0.40 -0.2
4,740,658 - OKFHMN_24290 0.40 -0.2
4,740,670 - OKFHMN_24290 0.44 +0.2
4,740,976 - +0.3
4,741,028 + -0.2
4,741,140 - tlyC OKFHMN_24295 0.13 +0.0
4,741,244 - tlyC OKFHMN_24295 0.20 -1.0
4,741,363 + tlyC OKFHMN_24295 0.27 -0.4
4,741,633 - tlyC OKFHMN_24295 0.44 -0.6
4,741,669 - tlyC OKFHMN_24295 0.46 +0.7
4,741,771 - tlyC OKFHMN_24295 0.53 +0.0
4,742,057 - tlyC OKFHMN_24295 0.71 +0.1
4,742,173 - tlyC OKFHMN_24295 0.78 +0.5
4,742,351 - tlyC OKFHMN_24295 0.89 +0.3
4,742,440 - -0.3
4,742,521 - -0.3
4,742,525 - +3.0
4,742,604 - -1.1
4,742,617 + -1.0
4,742,881 - +2.1

Or see this region's nucleotide sequence