Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24050

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrcnA and rcnR are separated by 120 nucleotidesrcnR and OKFHMN_24055 are separated by 109 nucleotidesOKFHMN_24055 and OKFHMN_24060 are separated by 9 nucleotides OKFHMN_24045: rcnA - nickel/cobalt efflux protein RcnA, at 4,693,312 to 4,694,163 rcnA OKFHMN_24050: rcnR - Ni(II)/Co(II)-binding transcriptional repressor RcnR, at 4,694,284 to 4,694,556 rcnR OKFHMN_24055: OKFHMN_24055 - Outer membrane protein, at 4,694,666 to 4,694,980 _24055 OKFHMN_24060: OKFHMN_24060 - hypothetical protein, at 4,694,990 to 4,695,337 _24060 Position (kb) 4694 4695Strain fitness (log2 ratio) -2 -1 0 1 2at 4693.370 kb on - strandat 4693.471 kb on - strand, within rcnAat 4693.598 kb on - strand, within rcnAat 4693.654 kb on - strand, within rcnAat 4693.806 kb on + strand, within rcnAat 4693.867 kb on - strand, within rcnAat 4694.016 kb on + strand, within rcnAat 4694.098 kb on + strandat 4694.475 kb on + strand, within rcnRat 4694.564 kb on + strandat 4694.575 kb on + strandat 4694.624 kb on + strandat 4694.657 kb on - strandat 4694.792 kb on - strand, within OKFHMN_24055at 4694.801 kb on - strand, within OKFHMN_24055at 4694.801 kb on - strand, within OKFHMN_24055at 4694.882 kb on - strand, within OKFHMN_24055at 4694.897 kb on - strand, within OKFHMN_24055at 4695.018 kb on + strandat 4695.019 kb on - strandat 4695.115 kb on + strand, within OKFHMN_24060at 4695.117 kb on + strand, within OKFHMN_24060at 4695.117 kb on - strand, within OKFHMN_24060at 4695.145 kb on + strand, within OKFHMN_24060at 4695.148 kb on - strand, within OKFHMN_24060at 4695.275 kb on - strand, within OKFHMN_24060at 4695.288 kb on + strand, within OKFHMN_24060at 4695.292 kb on + strand, within OKFHMN_24060at 4695.555 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
4,693,370 - +0.3
4,693,471 - rcnA OKFHMN_24045 0.19 +0.1
4,693,598 - rcnA OKFHMN_24045 0.34 +0.5
4,693,654 - rcnA OKFHMN_24045 0.40 +0.9
4,693,806 + rcnA OKFHMN_24045 0.58 +0.3
4,693,867 - rcnA OKFHMN_24045 0.65 +1.8
4,694,016 + rcnA OKFHMN_24045 0.83 +0.5
4,694,098 + +0.4
4,694,475 + rcnR OKFHMN_24050 0.70 +0.4
4,694,564 + +0.6
4,694,575 + +0.4
4,694,624 + +0.5
4,694,657 - -1.1
4,694,792 - OKFHMN_24055 0.40 -1.0
4,694,801 - OKFHMN_24055 0.43 -0.3
4,694,801 - OKFHMN_24055 0.43 -0.7
4,694,882 - OKFHMN_24055 0.69 -0.1
4,694,897 - OKFHMN_24055 0.73 +0.2
4,695,018 + -0.3
4,695,019 - -0.3
4,695,115 + OKFHMN_24060 0.36 -1.9
4,695,117 + OKFHMN_24060 0.36 +0.8
4,695,117 - OKFHMN_24060 0.36 +0.3
4,695,145 + OKFHMN_24060 0.45 -0.8
4,695,148 - OKFHMN_24060 0.45 +0.6
4,695,275 - OKFHMN_24060 0.82 -0.8
4,695,288 + OKFHMN_24060 0.86 +0.1
4,695,292 + OKFHMN_24060 0.87 -0.1
4,695,555 - +0.1

Or see this region's nucleotide sequence