Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ile2_trna and Arg_trna are separated by 9 nucleotides Arg_trna and Arg_trna are separated by 13 nucleotides Arg_trna and OKFHMN_23755 are separated by 511 nucleotides OKFHMN_23755 and OKFHMN_23760 are separated by 136 nucleotides OKFHMN_23760 and OKFHMN_23765 are separated by 40 nucleotides OKFHMN_23765 and OKFHMN_23770 are separated by 77 nucleotides OKFHMN_23770 and OKFHMN_23775 are separated by 4 nucleotides
OKFHMN_23730: Ile2_trna - tRNA-Ile2(cat), at 4,633,873 to 4,633,948
_trna
OKFHMN_23735: Arg_trna - tRNA-Arg(tcg), at 4,633,958 to 4,634,034
_trna
OKFHMN_23740: Arg_trna - tRNA-Arg(tct), at 4,634,048 to 4,634,124
_trna
OKFHMN_23755: OKFHMN_23755 - sialate O-acetylesterase, at 4,634,636 to 4,636,582
_23755
OKFHMN_23760: OKFHMN_23760 - DUF1378 domain-containing protein, at 4,636,719 to 4,636,898
_23760
OKFHMN_23765: OKFHMN_23765 - DUF826 domain-containing protein, at 4,636,939 to 4,637,184
_23765
OKFHMN_23770: OKFHMN_23770 - holin, at 4,637,262 to 4,637,477
_23770
OKFHMN_23775: OKFHMN_23775 - SAR-endolysin, at 4,637,482 to 4,638,015
_23775
Position (kb)
4634
4635
4636
4637 Strain fitness (log2 ratio)
-1
0
1 at 4633.718 kb on + strand at 4633.719 kb on - strand at 4633.813 kb on + strand at 4633.814 kb on - strand at 4633.833 kb on + strand at 4633.952 kb on + strand at 4633.953 kb on - strand at 4633.953 kb on - strand at 4633.962 kb on + strand at 4634.135 kb on - strand at 4634.197 kb on + strand at 4634.197 kb on + strand at 4634.251 kb on + strand at 4634.847 kb on + strand, within OKFHMN_23755 at 4634.882 kb on - strand, within OKFHMN_23755
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,633,718 + +0.4 4,633,719 - +0.2 4,633,813 + -0.5 4,633,814 - -0.1 4,633,833 + -1.7 4,633,952 + -0.3 4,633,953 - +0.7 4,633,953 - +0.6 4,633,962 + +0.2 4,634,135 - +0.4 4,634,197 + -0.1 4,634,197 + -0.3 4,634,251 + +0.0 4,634,847 + OKFHMN_23755 0.11 +1.2 4,634,882 - OKFHMN_23755 0.13 +0.3
Or see this region's nucleotide sequence