Strain Fitness in Escherichia coli ECRC100 around OKFHMN_23635

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmdtQ and yohF are separated by 52 nucleotidesyohF and yohD are separated by 129 nucleotidesyohD and yohC are separated by 169 nucleotidesyohC and pbpG are separated by 173 nucleotides OKFHMN_23625: mdtQ - multidrug resistance outer membrane protein MdtQ, at 4,615,595 to 4,617,121 mdtQ OKFHMN_23630: yohF - SDR family oxidoreductase, at 4,617,174 to 4,617,935 yohF OKFHMN_23635: yohD - Inner membrane protein YohD, at 4,618,065 to 4,618,643 yohD OKFHMN_23640: yohC - Inner membrane protein YohC, at 4,618,813 to 4,619,400 yohC OKFHMN_23645: pbpG - D-alanyl-D-alanine endopeptidase, at 4,619,574 to 4,620,506 pbpG Position (kb) 4618 4619Strain fitness (log2 ratio) -2 -1 0 1at 4617.126 kb on - strandat 4617.137 kb on - strandat 4617.142 kb on + strandat 4617.159 kb on + strandat 4617.258 kb on - strand, within yohFat 4617.266 kb on + strand, within yohFat 4617.313 kb on + strand, within yohFat 4617.314 kb on - strand, within yohFat 4617.317 kb on + strand, within yohFat 4617.587 kb on + strand, within yohFat 4617.606 kb on - strand, within yohFat 4617.902 kb on + strandat 4617.986 kb on + strandat 4618.067 kb on - strandat 4618.337 kb on - strand, within yohDat 4618.340 kb on + strand, within yohDat 4618.466 kb on - strand, within yohDat 4618.528 kb on - strand, within yohDat 4618.528 kb on - strand, within yohDat 4618.609 kb on + strandat 4618.615 kb on + strandat 4618.632 kb on - strandat 4618.673 kb on + strandat 4618.673 kb on + strandat 4618.674 kb on - strandat 4618.679 kb on + strandat 4618.680 kb on - strandat 4618.714 kb on + strandat 4618.715 kb on - strandat 4618.768 kb on + strandat 4618.769 kb on - strandat 4618.770 kb on + strandat 4618.813 kb on - strandat 4618.813 kb on - strandat 4618.866 kb on + strandat 4618.898 kb on - strand, within yohCat 4619.046 kb on + strand, within yohCat 4619.188 kb on + strand, within yohCat 4619.250 kb on - strand, within yohCat 4619.369 kb on + strandat 4619.369 kb on + strandat 4619.370 kb on - strandat 4619.370 kb on - strandat 4619.596 kb on + strandat 4619.597 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,617,126 - +0.9
4,617,137 - +0.4
4,617,142 + +0.5
4,617,159 + +1.5
4,617,258 - yohF OKFHMN_23630 0.11 +0.7
4,617,266 + yohF OKFHMN_23630 0.12 +1.0
4,617,313 + yohF OKFHMN_23630 0.18 +0.6
4,617,314 - yohF OKFHMN_23630 0.18 -2.1
4,617,317 + yohF OKFHMN_23630 0.19 -0.5
4,617,587 + yohF OKFHMN_23630 0.54 -0.2
4,617,606 - yohF OKFHMN_23630 0.57 -0.3
4,617,902 + +1.1
4,617,986 + -2.6
4,618,067 - +0.7
4,618,337 - yohD OKFHMN_23635 0.47 +1.4
4,618,340 + yohD OKFHMN_23635 0.47 -0.5
4,618,466 - yohD OKFHMN_23635 0.69 -1.7
4,618,528 - yohD OKFHMN_23635 0.80 +0.3
4,618,528 - yohD OKFHMN_23635 0.80 +0.6
4,618,609 + +0.6
4,618,615 + -0.3
4,618,632 - +0.7
4,618,673 + +0.4
4,618,673 + +0.1
4,618,674 - +1.7
4,618,679 + +0.2
4,618,680 - -0.4
4,618,714 + -0.4
4,618,715 - +1.2
4,618,768 + +1.0
4,618,769 - +1.3
4,618,770 + +1.1
4,618,813 - -0.8
4,618,813 - -1.5
4,618,866 + +0.3
4,618,898 - yohC OKFHMN_23640 0.14 +1.1
4,619,046 + yohC OKFHMN_23640 0.40 -0.8
4,619,188 + yohC OKFHMN_23640 0.64 +0.7
4,619,250 - yohC OKFHMN_23640 0.74 +0.5
4,619,369 + -1.2
4,619,369 + -2.0
4,619,370 - -2.1
4,619,370 - +0.2
4,619,596 + -0.8
4,619,597 - +1.1

Or see this region's nucleotide sequence