Strain Fitness in Escherichia coli ECRC100 around OKFHMN_23525

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeiB and galS are separated by 141 nucleotidesgalS and mglB are separated by 278 nucleotides OKFHMN_23520: yeiB - Uncharacterized protein YeiB, at 4,595,397 to 4,596,554 yeiB OKFHMN_23525: galS - HTH-type transcriptional regulator GalS, at 4,596,696 to 4,597,736 galS OKFHMN_23530: mglB - galactose/glucose ABC transporter substrate-binding protein MglB, at 4,598,015 to 4,599,013 mglB Position (kb) 4596 4597 4598Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4595.792 kb on + strand, within yeiBat 4596.191 kb on - strand, within yeiBat 4596.282 kb on - strand, within yeiBat 4596.330 kb on + strand, within yeiBat 4596.334 kb on + strand, within yeiBat 4596.540 kb on - strandat 4596.628 kb on + strandat 4596.628 kb on + strandat 4596.688 kb on + strandat 4596.966 kb on + strand, within galSat 4596.966 kb on + strand, within galSat 4596.988 kb on - strand, within galSat 4597.044 kb on - strand, within galSat 4597.123 kb on + strand, within galSat 4597.278 kb on - strand, within galSat 4597.426 kb on - strand, within galSat 4597.463 kb on - strand, within galSat 4597.463 kb on - strand, within galSat 4597.463 kb on - strand, within galSat 4597.517 kb on + strand, within galSat 4597.712 kb on + strandat 4597.787 kb on - strandat 4597.859 kb on + strandat 4597.870 kb on - strandat 4597.956 kb on - strandat 4598.011 kb on + strandat 4598.020 kb on + strandat 4598.113 kb on + strandat 4598.113 kb on + strandat 4598.117 kb on + strand, within mglBat 4598.118 kb on - strand, within mglBat 4598.131 kb on + strand, within mglBat 4598.131 kb on + strand, within mglBat 4598.131 kb on + strand, within mglBat 4598.132 kb on - strand, within mglBat 4598.244 kb on + strand, within mglBat 4598.244 kb on + strand, within mglBat 4598.245 kb on - strand, within mglBat 4598.353 kb on + strand, within mglB

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,595,792 + yeiB OKFHMN_23520 0.34 +0.9
4,596,191 - yeiB OKFHMN_23520 0.69 -0.7
4,596,282 - yeiB OKFHMN_23520 0.76 +0.8
4,596,330 + yeiB OKFHMN_23520 0.81 +2.4
4,596,334 + yeiB OKFHMN_23520 0.81 +0.5
4,596,540 - -2.1
4,596,628 + +1.3
4,596,628 + +1.4
4,596,688 + -0.0
4,596,966 + galS OKFHMN_23525 0.26 +0.5
4,596,966 + galS OKFHMN_23525 0.26 +1.8
4,596,988 - galS OKFHMN_23525 0.28 +0.1
4,597,044 - galS OKFHMN_23525 0.33 -1.6
4,597,123 + galS OKFHMN_23525 0.41 +0.3
4,597,278 - galS OKFHMN_23525 0.56 -0.6
4,597,426 - galS OKFHMN_23525 0.70 +0.8
4,597,463 - galS OKFHMN_23525 0.74 +0.8
4,597,463 - galS OKFHMN_23525 0.74 -1.0
4,597,463 - galS OKFHMN_23525 0.74 -0.5
4,597,517 + galS OKFHMN_23525 0.79 +0.6
4,597,712 + +0.4
4,597,787 - +0.0
4,597,859 + +0.4
4,597,870 - +1.6
4,597,956 - +1.3
4,598,011 + -0.3
4,598,020 + +0.3
4,598,113 + -0.5
4,598,113 + +0.2
4,598,117 + mglB OKFHMN_23530 0.10 -2.9
4,598,118 - mglB OKFHMN_23530 0.10 +1.6
4,598,131 + mglB OKFHMN_23530 0.12 -0.1
4,598,131 + mglB OKFHMN_23530 0.12 -2.0
4,598,131 + mglB OKFHMN_23530 0.12 +0.5
4,598,132 - mglB OKFHMN_23530 0.12 -0.3
4,598,244 + mglB OKFHMN_23530 0.23 -0.2
4,598,244 + mglB OKFHMN_23530 0.23 +1.5
4,598,245 - mglB OKFHMN_23530 0.23 +0.8
4,598,353 + mglB OKFHMN_23530 0.34 +1.0

Or see this region's nucleotide sequence