Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfcA and epmC overlap by 1 nucleotides epmC and yfcL are separated by 33 nucleotides yfcL and mnmC are separated by 120 nucleotides mnmC and fabB are separated by 158 nucleotides
OKFHMN_22625: yfcA - putative membrane transporter protein YfcA, at 4,402,656 to 4,403,465
yfcA
OKFHMN_22630: epmC - elongation factor P hydroxylase, at 4,403,465 to 4,404,013
epmC
OKFHMN_22635: yfcL - Uncharacterized protein YfcL, at 4,404,047 to 4,404,325
yfcL
OKFHMN_22640: mnmC - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 4,404,446 to 4,406,452
mnmC
OKFHMN_22645: fabB - beta-ketoacyl-ACP synthase I, at 4,406,611 to 4,407,831
fabB
Position (kb)
4404
4405
4406
4407 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4403.463 kb on + strand at 4403.464 kb on - strand at 4403.464 kb on - strand at 4403.473 kb on + strand at 4403.545 kb on + strand, within epmC at 4403.567 kb on + strand, within epmC at 4403.589 kb on + strand, within epmC at 4403.590 kb on - strand, within epmC at 4403.595 kb on - strand, within epmC at 4403.595 kb on - strand, within epmC at 4403.660 kb on - strand, within epmC at 4403.813 kb on - strand, within epmC at 4403.954 kb on + strand, within epmC at 4403.957 kb on + strand, within epmC at 4404.151 kb on + strand, within yfcL at 4404.151 kb on + strand, within yfcL at 4404.151 kb on + strand, within yfcL at 4404.152 kb on - strand, within yfcL at 4404.152 kb on - strand, within yfcL at 4404.287 kb on - strand, within yfcL at 4404.287 kb on - strand, within yfcL at 4404.324 kb on - strand at 4404.395 kb on + strand at 4404.396 kb on - strand at 4404.467 kb on - strand at 4404.520 kb on + strand at 4404.609 kb on - strand at 4404.659 kb on - strand, within mnmC at 4404.719 kb on - strand, within mnmC at 4404.723 kb on - strand, within mnmC at 4404.864 kb on + strand, within mnmC at 4404.865 kb on - strand, within mnmC at 4404.905 kb on - strand, within mnmC at 4404.943 kb on - strand, within mnmC at 4404.952 kb on - strand, within mnmC at 4404.998 kb on - strand, within mnmC at 4405.171 kb on - strand, within mnmC at 4405.258 kb on + strand, within mnmC at 4405.259 kb on - strand, within mnmC at 4405.259 kb on - strand, within mnmC at 4405.259 kb on - strand, within mnmC at 4405.444 kb on - strand, within mnmC at 4405.509 kb on - strand, within mnmC at 4405.509 kb on - strand, within mnmC at 4405.584 kb on - strand, within mnmC at 4405.710 kb on - strand, within mnmC at 4405.823 kb on - strand, within mnmC at 4405.891 kb on + strand, within mnmC at 4405.892 kb on - strand, within mnmC at 4405.892 kb on - strand, within mnmC at 4405.950 kb on - strand, within mnmC at 4406.027 kb on + strand, within mnmC at 4406.027 kb on + strand, within mnmC at 4406.168 kb on + strand, within mnmC at 4406.240 kb on + strand, within mnmC at 4406.317 kb on + strand at 4406.334 kb on + strand at 4406.402 kb on - strand at 4406.413 kb on + strand at 4406.435 kb on + strand at 4406.435 kb on + strand at 4406.435 kb on + strand at 4406.442 kb on + strand at 4406.454 kb on + strand at 4406.460 kb on - strand at 4406.488 kb on + strand at 4406.489 kb on - strand at 4406.524 kb on - strand at 4406.524 kb on - strand at 4406.524 kb on - strand at 4406.581 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,403,463 + -0.1 4,403,464 - +0.4 4,403,464 - +1.2 4,403,473 + +0.7 4,403,545 + epmC OKFHMN_22630 0.15 +1.2 4,403,567 + epmC OKFHMN_22630 0.19 +0.3 4,403,589 + epmC OKFHMN_22630 0.23 +0.8 4,403,590 - epmC OKFHMN_22630 0.23 +0.4 4,403,595 - epmC OKFHMN_22630 0.24 +0.1 4,403,595 - epmC OKFHMN_22630 0.24 -0.5 4,403,660 - epmC OKFHMN_22630 0.36 -0.1 4,403,813 - epmC OKFHMN_22630 0.63 -1.9 4,403,954 + epmC OKFHMN_22630 0.89 -0.1 4,403,957 + epmC OKFHMN_22630 0.90 -2.9 4,404,151 + yfcL OKFHMN_22635 0.37 +0.6 4,404,151 + yfcL OKFHMN_22635 0.37 +0.1 4,404,151 + yfcL OKFHMN_22635 0.37 +0.1 4,404,152 - yfcL OKFHMN_22635 0.38 +1.4 4,404,152 - yfcL OKFHMN_22635 0.38 -0.6 4,404,287 - yfcL OKFHMN_22635 0.86 +0.7 4,404,287 - yfcL OKFHMN_22635 0.86 +1.2 4,404,324 - -1.2 4,404,395 + -0.7 4,404,396 - -0.4 4,404,467 - +1.1 4,404,520 + -0.9 4,404,609 - -2.1 4,404,659 - mnmC OKFHMN_22640 0.11 -0.3 4,404,719 - mnmC OKFHMN_22640 0.14 +0.3 4,404,723 - mnmC OKFHMN_22640 0.14 +0.4 4,404,864 + mnmC OKFHMN_22640 0.21 +1.5 4,404,865 - mnmC OKFHMN_22640 0.21 +1.3 4,404,905 - mnmC OKFHMN_22640 0.23 +1.0 4,404,943 - mnmC OKFHMN_22640 0.25 -0.3 4,404,952 - mnmC OKFHMN_22640 0.25 +0.4 4,404,998 - mnmC OKFHMN_22640 0.28 +0.5 4,405,171 - mnmC OKFHMN_22640 0.36 +0.3 4,405,258 + mnmC OKFHMN_22640 0.40 +1.7 4,405,259 - mnmC OKFHMN_22640 0.41 +0.4 4,405,259 - mnmC OKFHMN_22640 0.41 -1.1 4,405,259 - mnmC OKFHMN_22640 0.41 -0.4 4,405,444 - mnmC OKFHMN_22640 0.50 +0.7 4,405,509 - mnmC OKFHMN_22640 0.53 +1.4 4,405,509 - mnmC OKFHMN_22640 0.53 -1.2 4,405,584 - mnmC OKFHMN_22640 0.57 +0.8 4,405,710 - mnmC OKFHMN_22640 0.63 -2.2 4,405,823 - mnmC OKFHMN_22640 0.69 -0.2 4,405,891 + mnmC OKFHMN_22640 0.72 -0.6 4,405,892 - mnmC OKFHMN_22640 0.72 +0.7 4,405,892 - mnmC OKFHMN_22640 0.72 -1.7 4,405,950 - mnmC OKFHMN_22640 0.75 +0.3 4,406,027 + mnmC OKFHMN_22640 0.79 -1.5 4,406,027 + mnmC OKFHMN_22640 0.79 +0.7 4,406,168 + mnmC OKFHMN_22640 0.86 -0.6 4,406,240 + mnmC OKFHMN_22640 0.89 +0.7 4,406,317 + +0.1 4,406,334 + -0.3 4,406,402 - +0.6 4,406,413 + -3.4 4,406,435 + -0.2 4,406,435 + -3.3 4,406,435 + -1.6 4,406,442 + -0.4 4,406,454 + +1.0 4,406,460 - +1.0 4,406,488 + -1.3 4,406,489 - +0.5 4,406,524 - -1.1 4,406,524 - +0.7 4,406,524 - -0.7 4,406,581 + -1.2
Or see this region's nucleotide sequence