Strain Fitness in Escherichia coli ECRC100 around OKFHMN_22440

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntevgA and evgL overlap by 4 nucleotidesevgL and emrK are separated by 388 nucleotidesemrK and emrY overlap by 1 nucleotides OKFHMN_22430: evgA - acid-sensing system DNA-binding response regulator EvgA, at 4,362,074 to 4,362,688 evgA OKFHMN_22435: evgL - Protein EvgL, at 4,362,685 to 4,362,714 evgL OKFHMN_22440: emrK - multidrug efflux MFS transporter periplasmic adaptor subunit EmrK, at 4,363,103 to 4,364,266 emrK OKFHMN_22445: emrY - multidrug efflux MFS transporter permease subunit EmrY, at 4,364,266 to 4,365,804 emrY Position (kb) 4363 4364 4365Strain fitness (log2 ratio) -1 0 1 2at 4362.556 kb on + strand, within evgAat 4362.812 kb on - strandat 4362.833 kb on + strandat 4362.899 kb on - strandat 4363.196 kb on + strandat 4363.567 kb on + strand, within emrKat 4363.584 kb on + strand, within emrKat 4363.735 kb on + strand, within emrKat 4363.878 kb on + strand, within emrKat 4363.917 kb on - strand, within emrKat 4364.192 kb on - strandat 4364.200 kb on - strandat 4364.325 kb on + strandat 4364.370 kb on + strandat 4364.396 kb on + strandat 4364.397 kb on - strandat 4364.397 kb on - strandat 4364.440 kb on - strand, within emrYat 4364.514 kb on - strand, within emrYat 4364.655 kb on - strand, within emrYat 4364.829 kb on - strand, within emrYat 4365.096 kb on + strand, within emrYat 4365.180 kb on + strand, within emrYat 4365.249 kb on - strand, within emrY

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,362,556 + evgA OKFHMN_22430 0.78 -0.4
4,362,812 - +0.2
4,362,833 + +0.4
4,362,899 - -0.4
4,363,196 + -1.7
4,363,567 + emrK OKFHMN_22440 0.40 +0.4
4,363,584 + emrK OKFHMN_22440 0.41 +0.2
4,363,735 + emrK OKFHMN_22440 0.54 +0.1
4,363,878 + emrK OKFHMN_22440 0.67 +0.4
4,363,917 - emrK OKFHMN_22440 0.70 +0.0
4,364,192 - +0.1
4,364,200 - +0.4
4,364,325 + -0.6
4,364,370 + -0.9
4,364,396 + -0.4
4,364,397 - +0.4
4,364,397 - +0.4
4,364,440 - emrY OKFHMN_22445 0.11 -0.1
4,364,514 - emrY OKFHMN_22445 0.16 -0.8
4,364,655 - emrY OKFHMN_22445 0.25 -0.9
4,364,829 - emrY OKFHMN_22445 0.37 +0.4
4,365,096 + emrY OKFHMN_22445 0.54 +2.0
4,365,180 + emrY OKFHMN_22445 0.59 +0.3
4,365,249 - emrY OKFHMN_22445 0.64 +1.9

Or see this region's nucleotide sequence