Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfgH and yfgG are separated by 313 nucleotides yfgG and OKFHMN_21785 are separated by 35 nucleotides OKFHMN_21785 and pdeF are separated by 181 nucleotides pdeF and ppx are separated by 38 nucleotides
OKFHMN_21775: yfgH - Uncharacterized lipoprotein YfgH, at 4,228,127 to 4,228,642
yfgH
OKFHMN_21780: yfgG - Uncharacterized protein YfgG, at 4,228,956 to 4,229,129
yfgG
OKFHMN_21785: OKFHMN_21785 - hypothetical protein, at 4,229,165 to 4,229,317
_21785
OKFHMN_21790: pdeF - cyclic-guanylate-specific phosphodiesterase PdeF, at 4,229,499 to 4,231,742
pdeF
OKFHMN_21795: ppx - exopolyphosphatase, at 4,231,781 to 4,233,322
ppx
Position (kb) 4229
4230
4231
4232 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4228.790 kb on + strand at 4229.049 kb on - strand, within yfgG at 4229.049 kb on - strand, within yfgG at 4229.070 kb on - strand, within yfgG at 4229.109 kb on - strand, within yfgG at 4229.189 kb on + strand, within OKFHMN_21785 at 4229.189 kb on + strand, within OKFHMN_21785 at 4229.190 kb on - strand, within OKFHMN_21785 at 4229.301 kb on + strand, within OKFHMN_21785 at 4229.329 kb on + strand at 4229.534 kb on + strand at 4229.595 kb on - strand at 4229.637 kb on + strand at 4229.817 kb on - strand, within pdeF at 4229.870 kb on + strand, within pdeF at 4229.871 kb on - strand, within pdeF at 4229.941 kb on + strand, within pdeF at 4230.065 kb on - strand, within pdeF at 4230.167 kb on - strand, within pdeF at 4230.234 kb on - strand, within pdeF at 4230.244 kb on + strand, within pdeF at 4230.287 kb on + strand, within pdeF at 4230.389 kb on - strand, within pdeF at 4230.410 kb on - strand, within pdeF at 4230.429 kb on + strand, within pdeF at 4230.429 kb on + strand, within pdeF at 4230.430 kb on - strand, within pdeF at 4230.432 kb on - strand, within pdeF at 4230.432 kb on - strand, within pdeF at 4230.432 kb on - strand, within pdeF at 4230.489 kb on + strand, within pdeF at 4230.490 kb on - strand, within pdeF at 4230.490 kb on - strand, within pdeF at 4230.571 kb on - strand, within pdeF at 4230.832 kb on - strand, within pdeF at 4230.837 kb on + strand, within pdeF at 4230.838 kb on - strand, within pdeF at 4230.861 kb on - strand, within pdeF at 4230.883 kb on + strand, within pdeF at 4230.951 kb on + strand, within pdeF at 4230.952 kb on - strand, within pdeF at 4230.952 kb on - strand, within pdeF at 4230.952 kb on - strand, within pdeF at 4230.952 kb on - strand, within pdeF at 4230.952 kb on - strand, within pdeF at 4230.974 kb on + strand, within pdeF at 4230.975 kb on - strand, within pdeF at 4231.068 kb on + strand, within pdeF at 4231.069 kb on - strand, within pdeF at 4231.069 kb on - strand, within pdeF at 4231.202 kb on + strand, within pdeF at 4231.244 kb on + strand, within pdeF at 4231.247 kb on + strand, within pdeF at 4231.314 kb on + strand, within pdeF at 4231.358 kb on + strand, within pdeF at 4231.376 kb on + strand, within pdeF at 4231.523 kb on + strand at 4231.552 kb on + strand at 4231.661 kb on + strand at 4231.662 kb on - strand at 4231.662 kb on - strand at 4231.662 kb on - strand at 4231.745 kb on - strand at 4231.783 kb on - strand at 4231.878 kb on - strand at 4232.092 kb on - strand, within ppx at 4232.164 kb on - strand, within ppx at 4232.292 kb on + strand, within ppx at 4232.415 kb on + strand, within ppx at 4232.468 kb on + strand, within ppx at 4232.573 kb on + strand, within ppx at 4232.664 kb on - strand, within ppx at 4232.664 kb on - strand, within ppx
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,228,790 + +0.6 4,229,049 - yfgG OKFHMN_21780 0.53 +0.3 4,229,049 - yfgG OKFHMN_21780 0.53 -0.8 4,229,070 - yfgG OKFHMN_21780 0.66 -0.1 4,229,109 - yfgG OKFHMN_21780 0.88 -2.6 4,229,189 + OKFHMN_21785 0.16 +0.4 4,229,189 + OKFHMN_21785 0.16 +0.5 4,229,190 - OKFHMN_21785 0.16 +1.2 4,229,301 + OKFHMN_21785 0.89 -2.0 4,229,329 + +1.0 4,229,534 + +0.1 4,229,595 - +0.6 4,229,637 + -0.2 4,229,817 - pdeF OKFHMN_21790 0.14 +0.1 4,229,870 + pdeF OKFHMN_21790 0.17 +0.4 4,229,871 - pdeF OKFHMN_21790 0.17 -0.7 4,229,941 + pdeF OKFHMN_21790 0.20 +0.4 4,230,065 - pdeF OKFHMN_21790 0.25 +0.3 4,230,167 - pdeF OKFHMN_21790 0.30 -1.7 4,230,234 - pdeF OKFHMN_21790 0.33 -0.9 4,230,244 + pdeF OKFHMN_21790 0.33 +0.2 4,230,287 + pdeF OKFHMN_21790 0.35 +0.3 4,230,389 - pdeF OKFHMN_21790 0.40 +0.4 4,230,410 - pdeF OKFHMN_21790 0.41 +0.2 4,230,429 + pdeF OKFHMN_21790 0.41 -0.8 4,230,429 + pdeF OKFHMN_21790 0.41 +0.8 4,230,430 - pdeF OKFHMN_21790 0.41 +3.7 4,230,432 - pdeF OKFHMN_21790 0.42 -0.9 4,230,432 - pdeF OKFHMN_21790 0.42 +0.2 4,230,432 - pdeF OKFHMN_21790 0.42 +0.5 4,230,489 + pdeF OKFHMN_21790 0.44 -0.4 4,230,490 - pdeF OKFHMN_21790 0.44 -0.9 4,230,490 - pdeF OKFHMN_21790 0.44 -0.3 4,230,571 - pdeF OKFHMN_21790 0.48 -0.4 4,230,832 - pdeF OKFHMN_21790 0.59 +0.0 4,230,837 + pdeF OKFHMN_21790 0.60 -0.1 4,230,838 - pdeF OKFHMN_21790 0.60 +0.7 4,230,861 - pdeF OKFHMN_21790 0.61 -0.3 4,230,883 + pdeF OKFHMN_21790 0.62 +0.3 4,230,951 + pdeF OKFHMN_21790 0.65 +2.3 4,230,952 - pdeF OKFHMN_21790 0.65 +0.7 4,230,952 - pdeF OKFHMN_21790 0.65 -0.5 4,230,952 - pdeF OKFHMN_21790 0.65 +0.1 4,230,952 - pdeF OKFHMN_21790 0.65 -1.2 4,230,952 - pdeF OKFHMN_21790 0.65 +0.4 4,230,974 + pdeF OKFHMN_21790 0.66 +0.4 4,230,975 - pdeF OKFHMN_21790 0.66 +1.1 4,231,068 + pdeF OKFHMN_21790 0.70 -0.0 4,231,069 - pdeF OKFHMN_21790 0.70 -0.0 4,231,069 - pdeF OKFHMN_21790 0.70 -0.7 4,231,202 + pdeF OKFHMN_21790 0.76 +0.1 4,231,244 + pdeF OKFHMN_21790 0.78 +0.2 4,231,247 + pdeF OKFHMN_21790 0.78 +0.1 4,231,314 + pdeF OKFHMN_21790 0.81 -0.4 4,231,358 + pdeF OKFHMN_21790 0.83 +1.6 4,231,376 + pdeF OKFHMN_21790 0.84 +1.3 4,231,523 + +0.1 4,231,552 + +0.1 4,231,661 + +0.5 4,231,662 - -1.1 4,231,662 - -0.6 4,231,662 - +1.3 4,231,745 - +0.9 4,231,783 - -0.3 4,231,878 - +0.7 4,232,092 - ppx OKFHMN_21795 0.20 -1.9 4,232,164 - ppx OKFHMN_21795 0.25 -1.7 4,232,292 + ppx OKFHMN_21795 0.33 -0.2 4,232,415 + ppx OKFHMN_21795 0.41 +2.6 4,232,468 + ppx OKFHMN_21795 0.45 -0.4 4,232,573 + ppx OKFHMN_21795 0.51 -0.4 4,232,664 - ppx OKFHMN_21795 0.57 -0.8 4,232,664 - ppx OKFHMN_21795 0.57 +0.9
Or see this region's nucleotide sequence