Strain Fitness in Escherichia coli ECRC100 around OKFHMN_21690

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbisC and dmsB overlap by 4 nucleotidesdmsB and dmsC overlap by 8 nucleotidesdmsC and dsrA overlap by 1 nucleotides OKFHMN_21685: bisC - dimethyl sulfoxide reductase subunit A, at 4,208,758 to 4,211,139 bisC OKFHMN_21690: dmsB - dimethylsulfoxide reductase subunit B, at 4,211,136 to 4,211,765 dmsB OKFHMN_21695: dmsC - dimethyl sulfoxide reductase, at 4,211,758 to 4,212,579 dmsC OKFHMN_21700: dsrA - ferredoxin, at 4,212,579 to 4,213,433 dsrA Position (kb) 4211 4212Strain fitness (log2 ratio) -2 -1 0 1 2at 4210.140 kb on + strand, within bisCat 4210.140 kb on + strand, within bisCat 4210.140 kb on + strand, within bisCat 4210.170 kb on + strand, within bisCat 4210.170 kb on + strand, within bisCat 4210.171 kb on - strand, within bisCat 4210.234 kb on - strand, within bisCat 4210.250 kb on + strand, within bisCat 4210.285 kb on + strand, within bisCat 4210.361 kb on - strand, within bisCat 4210.365 kb on + strand, within bisCat 4210.366 kb on - strand, within bisCat 4210.366 kb on - strand, within bisCat 4210.726 kb on + strand, within bisCat 4210.830 kb on + strand, within bisCat 4210.915 kb on - strandat 4210.989 kb on - strandat 4210.996 kb on - strandat 4211.034 kb on + strandat 4211.035 kb on - strandat 4211.061 kb on - strandat 4211.079 kb on + strandat 4211.179 kb on + strandat 4211.283 kb on + strand, within dmsBat 4211.283 kb on + strand, within dmsBat 4211.284 kb on - strand, within dmsBat 4211.336 kb on + strand, within dmsBat 4211.349 kb on + strand, within dmsBat 4211.350 kb on - strand, within dmsBat 4211.352 kb on - strand, within dmsBat 4211.423 kb on + strand, within dmsBat 4211.424 kb on - strand, within dmsBat 4211.462 kb on + strand, within dmsBat 4211.462 kb on + strand, within dmsBat 4211.462 kb on + strand, within dmsBat 4211.463 kb on - strand, within dmsBat 4211.574 kb on - strand, within dmsBat 4211.622 kb on - strand, within dmsBat 4211.844 kb on + strand, within dmsCat 4211.889 kb on - strand, within dmsCat 4211.889 kb on - strand, within dmsCat 4211.916 kb on - strand, within dmsCat 4211.932 kb on - strand, within dmsCat 4211.936 kb on + strand, within dmsCat 4211.936 kb on + strand, within dmsCat 4211.937 kb on - strand, within dmsCat 4212.009 kb on + strand, within dmsCat 4212.093 kb on + strand, within dmsCat 4212.093 kb on + strand, within dmsCat 4212.093 kb on + strand, within dmsCat 4212.153 kb on + strand, within dmsCat 4212.153 kb on + strand, within dmsCat 4212.153 kb on + strand, within dmsCat 4212.178 kb on + strand, within dmsCat 4212.178 kb on + strand, within dmsCat 4212.179 kb on - strand, within dmsCat 4212.193 kb on - strand, within dmsCat 4212.200 kb on + strand, within dmsCat 4212.201 kb on - strand, within dmsCat 4212.201 kb on - strand, within dmsCat 4212.201 kb on - strand, within dmsCat 4212.201 kb on - strand, within dmsCat 4212.204 kb on + strand, within dmsCat 4212.204 kb on + strand, within dmsCat 4212.233 kb on + strand, within dmsCat 4212.233 kb on + strand, within dmsCat 4212.233 kb on + strand, within dmsCat 4212.234 kb on - strand, within dmsCat 4212.419 kb on + strand, within dmsCat 4212.420 kb on - strand, within dmsCat 4212.524 kb on + strandat 4212.525 kb on - strandat 4212.531 kb on - strandat 4212.546 kb on + strandat 4212.567 kb on + strandat 4212.584 kb on - strandat 4212.590 kb on + strandat 4212.595 kb on + strandat 4212.722 kb on + strand, within dsrAat 4212.722 kb on + strand, within dsrAat 4212.747 kb on - strand, within dsrAat 4212.747 kb on - strand, within dsrA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,210,140 + bisC OKFHMN_21685 0.58 +1.1
4,210,140 + bisC OKFHMN_21685 0.58 -0.5
4,210,140 + bisC OKFHMN_21685 0.58 -0.2
4,210,170 + bisC OKFHMN_21685 0.59 -0.2
4,210,170 + bisC OKFHMN_21685 0.59 -0.1
4,210,171 - bisC OKFHMN_21685 0.59 +0.1
4,210,234 - bisC OKFHMN_21685 0.62 -0.6
4,210,250 + bisC OKFHMN_21685 0.63 +1.5
4,210,285 + bisC OKFHMN_21685 0.64 +0.5
4,210,361 - bisC OKFHMN_21685 0.67 -0.8
4,210,365 + bisC OKFHMN_21685 0.67 +0.5
4,210,366 - bisC OKFHMN_21685 0.68 +0.1
4,210,366 - bisC OKFHMN_21685 0.68 -1.7
4,210,726 + bisC OKFHMN_21685 0.83 -0.0
4,210,830 + bisC OKFHMN_21685 0.87 +0.5
4,210,915 - +0.1
4,210,989 - -0.2
4,210,996 - -0.8
4,211,034 + -0.2
4,211,035 - +0.2
4,211,061 - +0.3
4,211,079 + +0.5
4,211,179 + +0.1
4,211,283 + dmsB OKFHMN_21690 0.23 +0.3
4,211,283 + dmsB OKFHMN_21690 0.23 -0.4
4,211,284 - dmsB OKFHMN_21690 0.23 -1.6
4,211,336 + dmsB OKFHMN_21690 0.32 +0.2
4,211,349 + dmsB OKFHMN_21690 0.34 +1.6
4,211,350 - dmsB OKFHMN_21690 0.34 -0.8
4,211,352 - dmsB OKFHMN_21690 0.34 -2.7
4,211,423 + dmsB OKFHMN_21690 0.46 -2.6
4,211,424 - dmsB OKFHMN_21690 0.46 -1.7
4,211,462 + dmsB OKFHMN_21690 0.52 +0.5
4,211,462 + dmsB OKFHMN_21690 0.52 -0.0
4,211,462 + dmsB OKFHMN_21690 0.52 +0.5
4,211,463 - dmsB OKFHMN_21690 0.52 -0.1
4,211,574 - dmsB OKFHMN_21690 0.70 -0.1
4,211,622 - dmsB OKFHMN_21690 0.77 -0.4
4,211,844 + dmsC OKFHMN_21695 0.10 +0.2
4,211,889 - dmsC OKFHMN_21695 0.16 -0.3
4,211,889 - dmsC OKFHMN_21695 0.16 +0.8
4,211,916 - dmsC OKFHMN_21695 0.19 +0.7
4,211,932 - dmsC OKFHMN_21695 0.21 -0.0
4,211,936 + dmsC OKFHMN_21695 0.22 +0.5
4,211,936 + dmsC OKFHMN_21695 0.22 +0.7
4,211,937 - dmsC OKFHMN_21695 0.22 -0.1
4,212,009 + dmsC OKFHMN_21695 0.31 +0.5
4,212,093 + dmsC OKFHMN_21695 0.41 -0.2
4,212,093 + dmsC OKFHMN_21695 0.41 -0.3
4,212,093 + dmsC OKFHMN_21695 0.41 +0.0
4,212,153 + dmsC OKFHMN_21695 0.48 +0.2
4,212,153 + dmsC OKFHMN_21695 0.48 +0.3
4,212,153 + dmsC OKFHMN_21695 0.48 +0.1
4,212,178 + dmsC OKFHMN_21695 0.51 +0.3
4,212,178 + dmsC OKFHMN_21695 0.51 +0.5
4,212,179 - dmsC OKFHMN_21695 0.51 +0.3
4,212,193 - dmsC OKFHMN_21695 0.53 +0.7
4,212,200 + dmsC OKFHMN_21695 0.54 -0.6
4,212,201 - dmsC OKFHMN_21695 0.54 -1.3
4,212,201 - dmsC OKFHMN_21695 0.54 -0.5
4,212,201 - dmsC OKFHMN_21695 0.54 -2.6
4,212,201 - dmsC OKFHMN_21695 0.54 +0.3
4,212,204 + dmsC OKFHMN_21695 0.54 +0.6
4,212,204 + dmsC OKFHMN_21695 0.54 -0.3
4,212,233 + dmsC OKFHMN_21695 0.58 -0.1
4,212,233 + dmsC OKFHMN_21695 0.58 +0.2
4,212,233 + dmsC OKFHMN_21695 0.58 -0.1
4,212,234 - dmsC OKFHMN_21695 0.58 +0.5
4,212,419 + dmsC OKFHMN_21695 0.80 +1.1
4,212,420 - dmsC OKFHMN_21695 0.81 -0.6
4,212,524 + +2.0
4,212,525 - +0.8
4,212,531 - +2.2
4,212,546 + +0.4
4,212,567 + +0.3
4,212,584 - +0.6
4,212,590 + -0.2
4,212,595 + +1.3
4,212,722 + dsrA OKFHMN_21700 0.17 +0.3
4,212,722 + dsrA OKFHMN_21700 0.17 +0.7
4,212,747 - dsrA OKFHMN_21700 0.20 +0.9
4,212,747 - dsrA OKFHMN_21700 0.20 +1.3

Or see this region's nucleotide sequence