Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt qseE and qseG are separated by 164 nucleotides qseG and qseF overlap by 11 nucleotides qseF and glnB are separated by 60 nucleotides glnB and hmpA are separated by 44 nucleotides
OKFHMN_21485: qseE - two component system sensor histidine kinase QseE/GlrK, at 4,163,160 to 4,164,542
qseE
OKFHMN_21490: qseG - two-component system QseEF-associated lipoprotein QseG, at 4,164,707 to 4,165,420
qseG
OKFHMN_21495: qseF - two-component system response regulator QseF/GlrR, at 4,165,410 to 4,166,744
qseF
OKFHMN_21500: glnB - nitrogen regulatory protein P-II, at 4,166,805 to 4,167,143
glnB
OKFHMN_21505: hmpA - NO-inducible flavohemoprotein, at 4,167,188 to 4,168,378
hmpA
Position (kb) 4165
4166
4167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4164.427 kb on + strand at 4164.447 kb on - strand at 4164.517 kb on + strand at 4164.546 kb on + strand at 4164.555 kb on - strand at 4164.567 kb on + strand at 4164.615 kb on - strand at 4164.624 kb on - strand at 4164.673 kb on - strand at 4164.707 kb on - strand at 4164.777 kb on + strand at 4164.778 kb on - strand at 4164.874 kb on + strand, within qseG at 4164.875 kb on - strand, within qseG at 4164.875 kb on - strand, within qseG at 4164.898 kb on + strand, within qseG at 4164.899 kb on - strand, within qseG at 4165.193 kb on + strand, within qseG at 4165.199 kb on - strand, within qseG at 4165.432 kb on + strand at 4165.432 kb on + strand at 4165.433 kb on - strand at 4165.433 kb on - strand at 4165.564 kb on + strand, within qseF at 4165.565 kb on - strand, within qseF at 4165.648 kb on + strand, within qseF at 4165.748 kb on - strand, within qseF at 4165.973 kb on + strand, within qseF at 4165.973 kb on + strand, within qseF at 4165.974 kb on - strand, within qseF at 4165.974 kb on - strand, within qseF at 4165.980 kb on - strand, within qseF at 4165.983 kb on - strand, within qseF at 4165.983 kb on - strand, within qseF at 4165.983 kb on - strand, within qseF at 4166.196 kb on - strand, within qseF at 4166.226 kb on - strand, within qseF at 4166.289 kb on + strand, within qseF at 4166.289 kb on + strand, within qseF at 4166.396 kb on + strand, within qseF at 4166.536 kb on + strand, within qseF at 4166.540 kb on - strand, within qseF at 4166.594 kb on + strand, within qseF at 4166.595 kb on - strand, within qseF at 4166.696 kb on + strand at 4166.753 kb on + strand at 4166.753 kb on + strand at 4166.753 kb on + strand at 4166.801 kb on + strand at 4166.941 kb on - strand, within glnB at 4166.955 kb on + strand, within glnB at 4166.955 kb on + strand, within glnB at 4166.955 kb on + strand, within glnB at 4166.956 kb on - strand, within glnB at 4166.957 kb on + strand, within glnB at 4166.958 kb on - strand, within glnB at 4166.958 kb on - strand, within glnB at 4167.030 kb on - strand, within glnB at 4167.030 kb on - strand, within glnB at 4167.035 kb on + strand, within glnB at 4167.036 kb on - strand, within glnB at 4167.199 kb on + strand at 4167.220 kb on - strand at 4167.254 kb on + strand at 4167.300 kb on + strand at 4167.301 kb on - strand at 4167.409 kb on - strand, within hmpA at 4167.454 kb on + strand, within hmpA at 4167.619 kb on + strand, within hmpA at 4167.730 kb on - strand, within hmpA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,164,427 + +3.0 4,164,447 - +0.2 4,164,517 + +0.4 4,164,546 + -0.4 4,164,555 - +0.2 4,164,567 + -0.8 4,164,615 - +0.7 4,164,624 - -0.4 4,164,673 - -0.1 4,164,707 - +0.8 4,164,777 + -2.2 4,164,778 - +1.4 4,164,874 + qseG OKFHMN_21490 0.23 +0.5 4,164,875 - qseG OKFHMN_21490 0.24 -0.6 4,164,875 - qseG OKFHMN_21490 0.24 -0.0 4,164,898 + qseG OKFHMN_21490 0.27 +1.0 4,164,899 - qseG OKFHMN_21490 0.27 -0.0 4,165,193 + qseG OKFHMN_21490 0.68 -3.0 4,165,199 - qseG OKFHMN_21490 0.69 -2.5 4,165,432 + +0.5 4,165,432 + +1.9 4,165,433 - -1.8 4,165,433 - -0.8 4,165,564 + qseF OKFHMN_21495 0.12 -0.2 4,165,565 - qseF OKFHMN_21495 0.12 -0.1 4,165,648 + qseF OKFHMN_21495 0.18 +0.5 4,165,748 - qseF OKFHMN_21495 0.25 +2.5 4,165,973 + qseF OKFHMN_21495 0.42 +0.4 4,165,973 + qseF OKFHMN_21495 0.42 -0.7 4,165,974 - qseF OKFHMN_21495 0.42 +0.2 4,165,974 - qseF OKFHMN_21495 0.42 +1.2 4,165,980 - qseF OKFHMN_21495 0.43 +0.2 4,165,983 - qseF OKFHMN_21495 0.43 +0.4 4,165,983 - qseF OKFHMN_21495 0.43 +0.6 4,165,983 - qseF OKFHMN_21495 0.43 -0.1 4,166,196 - qseF OKFHMN_21495 0.59 +0.8 4,166,226 - qseF OKFHMN_21495 0.61 +0.0 4,166,289 + qseF OKFHMN_21495 0.66 -1.8 4,166,289 + qseF OKFHMN_21495 0.66 +0.5 4,166,396 + qseF OKFHMN_21495 0.74 +0.7 4,166,536 + qseF OKFHMN_21495 0.84 +1.2 4,166,540 - qseF OKFHMN_21495 0.85 +0.5 4,166,594 + qseF OKFHMN_21495 0.89 +0.6 4,166,595 - qseF OKFHMN_21495 0.89 +0.1 4,166,696 + +0.0 4,166,753 + -0.5 4,166,753 + +0.2 4,166,753 + +0.8 4,166,801 + -0.7 4,166,941 - glnB OKFHMN_21500 0.40 -1.0 4,166,955 + glnB OKFHMN_21500 0.44 -0.2 4,166,955 + glnB OKFHMN_21500 0.44 +0.1 4,166,955 + glnB OKFHMN_21500 0.44 -0.8 4,166,956 - glnB OKFHMN_21500 0.45 +1.4 4,166,957 + glnB OKFHMN_21500 0.45 -0.0 4,166,958 - glnB OKFHMN_21500 0.45 -0.3 4,166,958 - glnB OKFHMN_21500 0.45 +0.0 4,167,030 - glnB OKFHMN_21500 0.66 +0.7 4,167,030 - glnB OKFHMN_21500 0.66 +0.9 4,167,035 + glnB OKFHMN_21500 0.68 +1.0 4,167,036 - glnB OKFHMN_21500 0.68 -1.8 4,167,199 + -0.5 4,167,220 - +1.4 4,167,254 + -1.1 4,167,300 + +1.2 4,167,301 - -0.8 4,167,409 - hmpA OKFHMN_21505 0.19 -0.2 4,167,454 + hmpA OKFHMN_21505 0.22 +0.3 4,167,619 + hmpA OKFHMN_21505 0.36 +0.6 4,167,730 - hmpA OKFHMN_21505 0.46 +0.2
Or see this region's nucleotide sequence