Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pssA and pssL overlap by 17 nucleotides pssL and pat are separated by 88 nucleotides pat and tapT are separated by 31 nucleotides tapT and trxC are separated by 68 nucleotides
OKFHMN_21310: pssA - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 4,130,300 to 4,131,655
pssA
OKFHMN_21315: pssL - Protein PssL, at 4,131,639 to 4,131,680
pssL
OKFHMN_21320: pat - protein lysine acetyltransferase, at 4,131,769 to 4,134,429
pat
OKFHMN_21325: tapT - tRNA-uridine aminocarboxypropyltransferase, at 4,134,461 to 4,135,159
tapT
OKFHMN_21330: trxC - thioredoxin TrxC, at 4,135,228 to 4,135,647
trxC
Position (kb)
4131
4132
4133
4134
4135 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4131.712 kb on - strand at 4131.712 kb on - strand at 4131.712 kb on - strand at 4131.892 kb on - strand at 4131.892 kb on - strand at 4131.892 kb on - strand at 4131.930 kb on - strand at 4131.950 kb on - strand at 4131.967 kb on + strand at 4131.967 kb on + strand at 4131.967 kb on + strand at 4132.161 kb on + strand, within pat at 4132.375 kb on - strand, within pat at 4132.539 kb on + strand, within pat at 4132.704 kb on + strand, within pat at 4133.115 kb on + strand, within pat at 4133.121 kb on + strand, within pat at 4133.121 kb on + strand, within pat at 4133.153 kb on + strand, within pat at 4133.237 kb on + strand, within pat at 4133.237 kb on + strand, within pat at 4133.238 kb on - strand, within pat at 4133.238 kb on - strand, within pat at 4133.272 kb on + strand, within pat at 4133.272 kb on + strand, within pat at 4133.273 kb on - strand, within pat at 4133.378 kb on + strand, within pat at 4133.379 kb on - strand, within pat at 4133.476 kb on + strand, within pat at 4133.506 kb on + strand, within pat at 4133.550 kb on + strand, within pat at 4133.583 kb on + strand, within pat at 4133.718 kb on + strand, within pat at 4133.749 kb on - strand, within pat at 4133.797 kb on + strand, within pat at 4133.810 kb on + strand, within pat at 4133.879 kb on - strand, within pat at 4133.879 kb on - strand, within pat at 4133.994 kb on + strand, within pat at 4134.043 kb on + strand, within pat at 4134.135 kb on + strand, within pat at 4134.206 kb on - strand at 4134.206 kb on - strand at 4134.225 kb on + strand at 4134.380 kb on - strand at 4134.430 kb on - strand at 4134.587 kb on - strand, within tapT at 4134.587 kb on - strand, within tapT at 4134.591 kb on - strand, within tapT at 4134.616 kb on + strand, within tapT at 4134.617 kb on - strand, within tapT at 4134.621 kb on + strand, within tapT at 4134.621 kb on + strand, within tapT at 4134.715 kb on + strand, within tapT at 4134.716 kb on - strand, within tapT at 4134.819 kb on + strand, within tapT at 4134.919 kb on + strand, within tapT at 4135.040 kb on + strand, within tapT at 4135.041 kb on - strand, within tapT at 4135.041 kb on - strand, within tapT at 4135.121 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,131,712 - +0.6 4,131,712 - -0.8 4,131,712 - +0.6 4,131,892 - -0.3 4,131,892 - +0.2 4,131,892 - -0.6 4,131,930 - +0.1 4,131,950 - +0.5 4,131,967 + -0.4 4,131,967 + +0.3 4,131,967 + -2.5 4,132,161 + pat OKFHMN_21320 0.15 +0.5 4,132,375 - pat OKFHMN_21320 0.23 -1.2 4,132,539 + pat OKFHMN_21320 0.29 +1.3 4,132,704 + pat OKFHMN_21320 0.35 -0.3 4,133,115 + pat OKFHMN_21320 0.51 +0.4 4,133,121 + pat OKFHMN_21320 0.51 +0.7 4,133,121 + pat OKFHMN_21320 0.51 -0.5 4,133,153 + pat OKFHMN_21320 0.52 +1.9 4,133,237 + pat OKFHMN_21320 0.55 +0.1 4,133,237 + pat OKFHMN_21320 0.55 +0.1 4,133,238 - pat OKFHMN_21320 0.55 -1.3 4,133,238 - pat OKFHMN_21320 0.55 +0.4 4,133,272 + pat OKFHMN_21320 0.56 +0.7 4,133,272 + pat OKFHMN_21320 0.56 -0.3 4,133,273 - pat OKFHMN_21320 0.57 +0.8 4,133,378 + pat OKFHMN_21320 0.60 +0.2 4,133,379 - pat OKFHMN_21320 0.61 +0.9 4,133,476 + pat OKFHMN_21320 0.64 +0.2 4,133,506 + pat OKFHMN_21320 0.65 -0.1 4,133,550 + pat OKFHMN_21320 0.67 +0.1 4,133,583 + pat OKFHMN_21320 0.68 -1.0 4,133,718 + pat OKFHMN_21320 0.73 -0.4 4,133,749 - pat OKFHMN_21320 0.74 +0.9 4,133,797 + pat OKFHMN_21320 0.76 -2.2 4,133,810 + pat OKFHMN_21320 0.77 +0.3 4,133,879 - pat OKFHMN_21320 0.79 -0.9 4,133,879 - pat OKFHMN_21320 0.79 +0.6 4,133,994 + pat OKFHMN_21320 0.84 +0.1 4,134,043 + pat OKFHMN_21320 0.85 -0.4 4,134,135 + pat OKFHMN_21320 0.89 +0.4 4,134,206 - +0.5 4,134,206 - +0.1 4,134,225 + -0.6 4,134,380 - +0.8 4,134,430 - +0.1 4,134,587 - tapT OKFHMN_21325 0.18 -0.2 4,134,587 - tapT OKFHMN_21325 0.18 -0.3 4,134,591 - tapT OKFHMN_21325 0.19 -0.1 4,134,616 + tapT OKFHMN_21325 0.22 -0.5 4,134,617 - tapT OKFHMN_21325 0.22 +0.7 4,134,621 + tapT OKFHMN_21325 0.23 -0.1 4,134,621 + tapT OKFHMN_21325 0.23 +0.3 4,134,715 + tapT OKFHMN_21325 0.36 -2.1 4,134,716 - tapT OKFHMN_21325 0.36 +0.0 4,134,819 + tapT OKFHMN_21325 0.51 +1.0 4,134,919 + tapT OKFHMN_21325 0.66 +0.2 4,135,040 + tapT OKFHMN_21325 0.83 +1.0 4,135,041 - tapT OKFHMN_21325 0.83 -0.8 4,135,041 - tapT OKFHMN_21325 0.83 -1.2 4,135,121 - -0.9
Or see this region's nucleotide sequence