Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20955

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_20950 and alpA are separated by 99 nucleotidesalpA and xerD are separated by 322 nucleotides OKFHMN_20950: OKFHMN_20950 - Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain, at 4,071,688 to 4,075,629 _20950 OKFHMN_20955: alpA - dipicolinate synthase, at 4,075,729 to 4,075,935 alpA OKFHMN_20960: xerD - site-specific integrase, at 4,076,258 to 4,077,463 xerD Position (kb) 4075 4076Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4074.740 kb on + strand, within OKFHMN_20950at 4074.741 kb on - strand, within OKFHMN_20950at 4074.741 kb on - strand, within OKFHMN_20950at 4074.851 kb on - strand, within OKFHMN_20950at 4074.851 kb on - strand, within OKFHMN_20950at 4074.853 kb on - strand, within OKFHMN_20950at 4074.894 kb on - strand, within OKFHMN_20950at 4074.924 kb on + strand, within OKFHMN_20950at 4074.932 kb on + strand, within OKFHMN_20950at 4074.933 kb on - strand, within OKFHMN_20950at 4074.934 kb on + strand, within OKFHMN_20950at 4074.934 kb on + strand, within OKFHMN_20950at 4074.934 kb on + strand, within OKFHMN_20950at 4074.935 kb on - strand, within OKFHMN_20950at 4074.935 kb on - strand, within OKFHMN_20950at 4075.178 kb on - strand, within OKFHMN_20950at 4075.178 kb on - strand, within OKFHMN_20950at 4075.183 kb on + strand, within OKFHMN_20950at 4075.184 kb on - strand, within OKFHMN_20950at 4075.415 kb on + strandat 4075.457 kb on + strandat 4075.502 kb on - strandat 4075.502 kb on - strandat 4075.516 kb on - strandat 4075.643 kb on + strandat 4075.729 kb on - strandat 4076.054 kb on + strandat 4076.419 kb on + strand, within xerDat 4076.620 kb on - strand, within xerDat 4076.708 kb on - strand, within xerDat 4076.871 kb on + strand, within xerD

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,074,740 + OKFHMN_20950 0.77 -1.1
4,074,741 - OKFHMN_20950 0.77 +0.1
4,074,741 - OKFHMN_20950 0.77 +0.5
4,074,851 - OKFHMN_20950 0.80 -0.6
4,074,851 - OKFHMN_20950 0.80 +0.4
4,074,853 - OKFHMN_20950 0.80 -0.2
4,074,894 - OKFHMN_20950 0.81 -0.3
4,074,924 + OKFHMN_20950 0.82 +1.9
4,074,932 + OKFHMN_20950 0.82 +0.7
4,074,933 - OKFHMN_20950 0.82 -4.4
4,074,934 + OKFHMN_20950 0.82 -1.2
4,074,934 + OKFHMN_20950 0.82 +2.4
4,074,934 + OKFHMN_20950 0.82 -1.8
4,074,935 - OKFHMN_20950 0.82 +1.3
4,074,935 - OKFHMN_20950 0.82 +0.2
4,075,178 - OKFHMN_20950 0.89 +1.3
4,075,178 - OKFHMN_20950 0.89 -0.1
4,075,183 + OKFHMN_20950 0.89 +1.6
4,075,184 - OKFHMN_20950 0.89 +0.4
4,075,415 + -3.2
4,075,457 + -0.6
4,075,502 - -1.0
4,075,502 - +0.7
4,075,516 - +0.1
4,075,643 + -1.1
4,075,729 - -0.5
4,076,054 + +1.1
4,076,419 + xerD OKFHMN_20960 0.13 -3.7
4,076,620 - xerD OKFHMN_20960 0.30 -1.3
4,076,708 - xerD OKFHMN_20960 0.37 +1.3
4,076,871 + xerD OKFHMN_20960 0.51 -1.0

Or see this region's nucleotide sequence