Strain Fitness in Escherichia coli ECRC100 around OKFHMN_19655

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygfK and mocA are separated by 321 nucleotidesmocA and yqeC are separated by 102 nucleotidesyqeC and yqeB are separated by 47 nucleotides OKFHMN_19650: ygfK - putative selenate reductase subunit YgfK, at 3,819,082 to 3,822,180 ygfK OKFHMN_19655: mocA - molybdenum cofactor cytidylyltransferase, at 3,822,502 to 3,823,080 mocA OKFHMN_19660: yqeC - selenium cofactor biosynthesis protein YqeC, at 3,823,183 to 3,823,953 yqeC OKFHMN_19665: yqeB - selenium-dependent molybdenum cofactor biosynthesis protein YqeB, at 3,824,001 to 3,825,626 yqeB Position (kb) 3822 3823 3824Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3821.548 kb on + strand, within ygfKat 3821.615 kb on - strand, within ygfKat 3821.620 kb on - strand, within ygfKat 3821.629 kb on - strand, within ygfKat 3821.673 kb on + strand, within ygfKat 3821.673 kb on + strand, within ygfKat 3821.706 kb on + strand, within ygfKat 3821.706 kb on + strand, within ygfKat 3821.707 kb on - strand, within ygfKat 3821.709 kb on + strand, within ygfKat 3821.710 kb on - strand, within ygfKat 3821.737 kb on - strand, within ygfKat 3821.739 kb on + strand, within ygfKat 3821.833 kb on - strand, within ygfKat 3821.841 kb on + strand, within ygfKat 3821.865 kb on + strand, within ygfKat 3821.889 kb on + strandat 3821.890 kb on - strandat 3822.058 kb on - strandat 3822.065 kb on - strandat 3822.074 kb on + strandat 3822.074 kb on + strandat 3822.094 kb on - strandat 3822.168 kb on + strandat 3822.169 kb on - strandat 3822.169 kb on - strandat 3822.169 kb on - strandat 3822.192 kb on + strandat 3822.192 kb on + strandat 3822.193 kb on - strandat 3822.206 kb on - strandat 3822.242 kb on + strandat 3822.322 kb on - strandat 3822.399 kb on + strandat 3822.439 kb on - strandat 3822.472 kb on + strandat 3822.876 kb on + strand, within mocAat 3822.981 kb on + strand, within mocAat 3823.010 kb on - strand, within mocAat 3823.061 kb on - strandat 3823.063 kb on - strandat 3823.080 kb on + strandat 3823.081 kb on - strandat 3823.081 kb on - strandat 3823.081 kb on - strandat 3823.096 kb on + strandat 3823.097 kb on - strandat 3823.127 kb on + strandat 3823.142 kb on + strandat 3823.143 kb on - strandat 3823.143 kb on - strandat 3823.154 kb on - strandat 3823.158 kb on + strandat 3823.223 kb on + strandat 3823.331 kb on + strand, within yqeCat 3823.350 kb on + strand, within yqeCat 3823.350 kb on + strand, within yqeCat 3823.350 kb on + strand, within yqeCat 3823.351 kb on - strand, within yqeCat 3823.351 kb on - strand, within yqeCat 3823.351 kb on - strand, within yqeCat 3823.351 kb on - strand, within yqeCat 3823.351 kb on - strand, within yqeCat 3823.351 kb on - strand, within yqeCat 3823.351 kb on - strand, within yqeCat 3823.357 kb on - strand, within yqeCat 3823.422 kb on + strand, within yqeCat 3823.423 kb on - strand, within yqeCat 3823.423 kb on - strand, within yqeCat 3823.423 kb on - strand, within yqeCat 3823.532 kb on + strand, within yqeCat 3823.601 kb on + strand, within yqeCat 3823.644 kb on + strand, within yqeCat 3823.701 kb on + strand, within yqeCat 3823.702 kb on - strand, within yqeCat 3823.779 kb on + strand, within yqeCat 3823.952 kb on - strandat 3823.964 kb on - strandat 3824.006 kb on + strandat 3824.067 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,821,548 + ygfK OKFHMN_19650 0.80 +0.7
3,821,615 - ygfK OKFHMN_19650 0.82 +0.2
3,821,620 - ygfK OKFHMN_19650 0.82 -0.6
3,821,629 - ygfK OKFHMN_19650 0.82 +0.4
3,821,673 + ygfK OKFHMN_19650 0.84 +0.0
3,821,673 + ygfK OKFHMN_19650 0.84 -0.1
3,821,706 + ygfK OKFHMN_19650 0.85 +0.4
3,821,706 + ygfK OKFHMN_19650 0.85 +0.5
3,821,707 - ygfK OKFHMN_19650 0.85 +0.0
3,821,709 + ygfK OKFHMN_19650 0.85 +1.0
3,821,710 - ygfK OKFHMN_19650 0.85 +0.2
3,821,737 - ygfK OKFHMN_19650 0.86 -0.8
3,821,739 + ygfK OKFHMN_19650 0.86 +0.8
3,821,833 - ygfK OKFHMN_19650 0.89 +0.1
3,821,841 + ygfK OKFHMN_19650 0.89 +0.7
3,821,865 + ygfK OKFHMN_19650 0.90 +1.0
3,821,889 + -0.2
3,821,890 - -0.3
3,822,058 - -0.5
3,822,065 - -0.1
3,822,074 + +0.7
3,822,074 + +1.7
3,822,094 - +1.0
3,822,168 + +0.0
3,822,169 - -3.0
3,822,169 - -0.2
3,822,169 - +0.7
3,822,192 + +0.3
3,822,192 + -0.2
3,822,193 - +0.4
3,822,206 - +0.1
3,822,242 + -0.3
3,822,322 - +0.8
3,822,399 + +1.5
3,822,439 - +0.8
3,822,472 + +0.1
3,822,876 + mocA OKFHMN_19655 0.65 +0.2
3,822,981 + mocA OKFHMN_19655 0.83 -1.0
3,823,010 - mocA OKFHMN_19655 0.88 +0.2
3,823,061 - +0.1
3,823,063 - -2.8
3,823,080 + +0.4
3,823,081 - +0.3
3,823,081 - +0.2
3,823,081 - +0.4
3,823,096 + -0.7
3,823,097 - +1.0
3,823,127 + +0.4
3,823,142 + +0.7
3,823,143 - +1.2
3,823,143 - +0.7
3,823,154 - +0.7
3,823,158 + -0.2
3,823,223 + +0.6
3,823,331 + yqeC OKFHMN_19660 0.19 -0.5
3,823,350 + yqeC OKFHMN_19660 0.22 +2.2
3,823,350 + yqeC OKFHMN_19660 0.22 +1.1
3,823,350 + yqeC OKFHMN_19660 0.22 +0.5
3,823,351 - yqeC OKFHMN_19660 0.22 +0.0
3,823,351 - yqeC OKFHMN_19660 0.22 +0.3
3,823,351 - yqeC OKFHMN_19660 0.22 -0.4
3,823,351 - yqeC OKFHMN_19660 0.22 -0.4
3,823,351 - yqeC OKFHMN_19660 0.22 +0.0
3,823,351 - yqeC OKFHMN_19660 0.22 +0.2
3,823,351 - yqeC OKFHMN_19660 0.22 -1.6
3,823,357 - yqeC OKFHMN_19660 0.23 +0.5
3,823,422 + yqeC OKFHMN_19660 0.31 +1.0
3,823,423 - yqeC OKFHMN_19660 0.31 -0.5
3,823,423 - yqeC OKFHMN_19660 0.31 +1.2
3,823,423 - yqeC OKFHMN_19660 0.31 -1.1
3,823,532 + yqeC OKFHMN_19660 0.45 +0.7
3,823,601 + yqeC OKFHMN_19660 0.54 +0.1
3,823,644 + yqeC OKFHMN_19660 0.60 +0.3
3,823,701 + yqeC OKFHMN_19660 0.67 -0.1
3,823,702 - yqeC OKFHMN_19660 0.67 +0.9
3,823,779 + yqeC OKFHMN_19660 0.77 +0.5
3,823,952 - -0.1
3,823,964 - +1.7
3,824,006 + -1.3
3,824,067 - +0.0

Or see this region's nucleotide sequence