Strain Fitness in Escherichia coli ECRC100 around OKFHMN_19395

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpgk and fbaA are separated by 214 nucleotidesfbaA and mscS are separated by 357 nucleotides OKFHMN_19390: pgk - phosphoglycerate kinase, at 3,766,293 to 3,767,456 pgk OKFHMN_19395: fbaA - class II fructose-bisphosphate aldolase, at 3,767,671 to 3,768,750 fbaA OKFHMN_19405: mscS - small-conductance mechanosensitive channel MscS, at 3,769,108 to 3,769,968 mscS Position (kb) 3767 3768 3769Strain fitness (log2 ratio) -2 -1 0 1at 3767.632 kb on + strandat 3767.641 kb on + strandat 3768.749 kb on - strandat 3768.749 kb on - strandat 3768.767 kb on + strandat 3768.932 kb on + strandat 3768.933 kb on - strandat 3769.006 kb on - strandat 3769.070 kb on + strandat 3769.070 kb on + strandat 3769.137 kb on - strandat 3769.182 kb on - strandat 3769.404 kb on - strand, within mscSat 3769.421 kb on + strand, within mscSat 3769.421 kb on + strand, within mscSat 3769.422 kb on - strand, within mscSat 3769.422 kb on - strand, within mscSat 3769.456 kb on - strand, within mscSat 3769.475 kb on + strand, within mscSat 3769.475 kb on + strand, within mscSat 3769.511 kb on - strand, within mscSat 3769.576 kb on - strand, within mscSat 3769.635 kb on + strand, within mscSat 3769.688 kb on - strand, within mscSat 3769.728 kb on + strand, within mscSat 3769.731 kb on + strand, within mscSat 3769.731 kb on + strand, within mscSat 3769.732 kb on - strand, within mscS

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,767,632 + -1.9
3,767,641 + -1.3
3,768,749 - -2.5
3,768,749 - -0.6
3,768,767 + -0.4
3,768,932 + +0.8
3,768,933 - -0.6
3,769,006 - -0.7
3,769,070 + -1.1
3,769,070 + +0.3
3,769,137 - +1.4
3,769,182 - +0.2
3,769,404 - mscS OKFHMN_19405 0.34 +0.1
3,769,421 + mscS OKFHMN_19405 0.36 +0.1
3,769,421 + mscS OKFHMN_19405 0.36 +1.2
3,769,422 - mscS OKFHMN_19405 0.36 +0.3
3,769,422 - mscS OKFHMN_19405 0.36 -0.7
3,769,456 - mscS OKFHMN_19405 0.40 +0.7
3,769,475 + mscS OKFHMN_19405 0.43 +0.2
3,769,475 + mscS OKFHMN_19405 0.43 +0.4
3,769,511 - mscS OKFHMN_19405 0.47 -0.4
3,769,576 - mscS OKFHMN_19405 0.54 +0.7
3,769,635 + mscS OKFHMN_19405 0.61 -1.1
3,769,688 - mscS OKFHMN_19405 0.67 -0.0
3,769,728 + mscS OKFHMN_19405 0.72 +0.0
3,769,731 + mscS OKFHMN_19405 0.72 -0.5
3,769,731 + mscS OKFHMN_19405 0.72 +0.9
3,769,732 - mscS OKFHMN_19405 0.72 +0.4

Or see this region's nucleotide sequence