Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zupT and ygiD are separated by 115 nucleotides ygiD and ygiC are separated by 37 nucleotides ygiC and ygiB are separated by 5 nucleotides ygiB and tolC are separated by 147 nucleotides
OKFHMN_18785: zupT - zinc transporter ZupT, at 3,646,978 to 3,647,751
zupT
OKFHMN_18790: ygiD - 4,5-DOPA dioxygenase extradiol, at 3,647,867 to 3,648,682
ygiD
OKFHMN_18795: ygiC - Putative acid--amine ligase YgiC, at 3,648,720 to 3,649,880
ygiC
OKFHMN_18800: ygiB - DUF1190 domain-containing protein, at 3,649,886 to 3,650,557
ygiB
OKFHMN_18805: tolC - outer membrane channel protein TolC, at 3,650,705 to 3,652,186
tolC
Position (kb)
3648
3649
3650 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3647.726 kb on - strand at 3647.832 kb on - strand at 3647.850 kb on - strand at 3647.877 kb on + strand at 3647.877 kb on + strand at 3647.877 kb on + strand at 3647.878 kb on - strand at 3647.878 kb on - strand at 3647.882 kb on - strand at 3647.887 kb on + strand at 3647.887 kb on + strand at 3647.908 kb on + strand at 3647.908 kb on + strand at 3647.908 kb on + strand at 3647.909 kb on - strand at 3647.909 kb on - strand at 3647.926 kb on - strand at 3647.959 kb on + strand, within ygiD at 3647.960 kb on - strand, within ygiD at 3647.960 kb on - strand, within ygiD at 3647.967 kb on - strand, within ygiD at 3647.967 kb on - strand, within ygiD at 3648.025 kb on - strand, within ygiD at 3648.119 kb on + strand, within ygiD at 3648.125 kb on - strand, within ygiD at 3648.250 kb on + strand, within ygiD at 3648.250 kb on + strand, within ygiD at 3648.250 kb on + strand, within ygiD at 3648.257 kb on + strand, within ygiD at 3648.258 kb on - strand, within ygiD at 3648.258 kb on - strand, within ygiD at 3648.427 kb on + strand, within ygiD at 3648.427 kb on + strand, within ygiD at 3648.427 kb on + strand, within ygiD at 3648.437 kb on + strand, within ygiD at 3648.464 kb on + strand, within ygiD at 3648.465 kb on - strand, within ygiD at 3648.465 kb on - strand, within ygiD at 3648.521 kb on + strand, within ygiD at 3648.570 kb on - strand, within ygiD at 3648.584 kb on + strand, within ygiD at 3648.585 kb on - strand, within ygiD at 3648.585 kb on - strand, within ygiD at 3648.591 kb on + strand, within ygiD at 3648.592 kb on - strand, within ygiD at 3648.592 kb on - strand, within ygiD at 3648.592 kb on - strand, within ygiD at 3648.637 kb on + strand at 3648.640 kb on - strand at 3648.654 kb on + strand at 3648.675 kb on + strand at 3648.676 kb on - strand at 3648.836 kb on + strand, within ygiC at 3648.838 kb on + strand, within ygiC at 3648.838 kb on + strand, within ygiC at 3648.839 kb on - strand, within ygiC at 3648.985 kb on + strand, within ygiC at 3649.092 kb on - strand, within ygiC at 3649.123 kb on - strand, within ygiC at 3649.123 kb on - strand, within ygiC at 3649.181 kb on - strand, within ygiC at 3649.508 kb on - strand, within ygiC at 3649.589 kb on - strand, within ygiC at 3649.769 kb on - strand at 3649.769 kb on - strand at 3649.771 kb on + strand at 3649.772 kb on - strand at 3649.772 kb on - strand at 3649.772 kb on - strand at 3649.772 kb on - strand at 3649.790 kb on - strand at 3649.801 kb on + strand at 3649.802 kb on - strand at 3649.863 kb on - strand at 3649.884 kb on + strand at 3649.933 kb on + strand at 3650.079 kb on + strand, within ygiB at 3650.079 kb on + strand, within ygiB at 3650.172 kb on + strand, within ygiB at 3650.355 kb on + strand, within ygiB at 3650.355 kb on + strand, within ygiB at 3650.366 kb on - strand, within ygiB at 3650.581 kb on - strand at 3650.581 kb on - strand at 3650.581 kb on - strand at 3650.584 kb on + strand at 3650.585 kb on - strand at 3650.596 kb on + strand at 3650.671 kb on - strand at 3650.731 kb on + strand at 3650.741 kb on - strand at 3650.779 kb on + strand at 3650.845 kb on + strand at 3650.846 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,647,726 - +1.3 3,647,832 - +0.1 3,647,850 - +1.3 3,647,877 + +2.0 3,647,877 + +0.1 3,647,877 + +0.4 3,647,878 - -0.3 3,647,878 - -0.3 3,647,882 - -0.6 3,647,887 + +1.0 3,647,887 + +0.3 3,647,908 + -0.0 3,647,908 + +0.4 3,647,908 + -0.5 3,647,909 - +0.3 3,647,909 - +0.2 3,647,926 - -1.7 3,647,959 + ygiD OKFHMN_18790 0.11 +0.1 3,647,960 - ygiD OKFHMN_18790 0.11 +0.7 3,647,960 - ygiD OKFHMN_18790 0.11 +0.6 3,647,967 - ygiD OKFHMN_18790 0.12 +0.1 3,647,967 - ygiD OKFHMN_18790 0.12 +0.3 3,648,025 - ygiD OKFHMN_18790 0.19 +0.3 3,648,119 + ygiD OKFHMN_18790 0.31 +0.7 3,648,125 - ygiD OKFHMN_18790 0.32 -0.2 3,648,250 + ygiD OKFHMN_18790 0.47 -0.0 3,648,250 + ygiD OKFHMN_18790 0.47 -0.8 3,648,250 + ygiD OKFHMN_18790 0.47 +0.1 3,648,257 + ygiD OKFHMN_18790 0.48 -0.2 3,648,258 - ygiD OKFHMN_18790 0.48 +1.3 3,648,258 - ygiD OKFHMN_18790 0.48 +1.0 3,648,427 + ygiD OKFHMN_18790 0.69 -0.4 3,648,427 + ygiD OKFHMN_18790 0.69 -1.3 3,648,427 + ygiD OKFHMN_18790 0.69 -0.2 3,648,437 + ygiD OKFHMN_18790 0.70 +0.5 3,648,464 + ygiD OKFHMN_18790 0.73 -2.5 3,648,465 - ygiD OKFHMN_18790 0.73 +0.3 3,648,465 - ygiD OKFHMN_18790 0.73 -0.9 3,648,521 + ygiD OKFHMN_18790 0.80 +0.6 3,648,570 - ygiD OKFHMN_18790 0.86 +0.8 3,648,584 + ygiD OKFHMN_18790 0.88 +2.3 3,648,585 - ygiD OKFHMN_18790 0.88 +0.6 3,648,585 - ygiD OKFHMN_18790 0.88 -1.9 3,648,591 + ygiD OKFHMN_18790 0.89 -0.2 3,648,592 - ygiD OKFHMN_18790 0.89 +0.4 3,648,592 - ygiD OKFHMN_18790 0.89 +0.0 3,648,592 - ygiD OKFHMN_18790 0.89 +0.1 3,648,637 + -0.3 3,648,640 - +0.4 3,648,654 + -0.1 3,648,675 + -0.4 3,648,676 - +0.4 3,648,836 + ygiC OKFHMN_18795 0.10 +0.0 3,648,838 + ygiC OKFHMN_18795 0.10 +0.2 3,648,838 + ygiC OKFHMN_18795 0.10 +0.5 3,648,839 - ygiC OKFHMN_18795 0.10 +0.3 3,648,985 + ygiC OKFHMN_18795 0.23 -3.3 3,649,092 - ygiC OKFHMN_18795 0.32 +0.6 3,649,123 - ygiC OKFHMN_18795 0.35 -0.2 3,649,123 - ygiC OKFHMN_18795 0.35 -0.3 3,649,181 - ygiC OKFHMN_18795 0.40 +0.2 3,649,508 - ygiC OKFHMN_18795 0.68 -2.2 3,649,589 - ygiC OKFHMN_18795 0.75 -0.1 3,649,769 - -0.1 3,649,769 - -2.8 3,649,771 + -1.7 3,649,772 - +1.0 3,649,772 - -0.4 3,649,772 - -0.3 3,649,772 - -0.5 3,649,790 - +0.8 3,649,801 + +0.3 3,649,802 - -0.5 3,649,863 - +0.1 3,649,884 + +0.4 3,649,933 + +1.9 3,650,079 + ygiB OKFHMN_18800 0.29 -0.4 3,650,079 + ygiB OKFHMN_18800 0.29 +1.9 3,650,172 + ygiB OKFHMN_18800 0.43 +0.2 3,650,355 + ygiB OKFHMN_18800 0.70 +0.0 3,650,355 + ygiB OKFHMN_18800 0.70 +1.1 3,650,366 - ygiB OKFHMN_18800 0.71 -0.2 3,650,581 - +0.1 3,650,581 - -2.1 3,650,581 - -0.4 3,650,584 + +0.0 3,650,585 - +1.9 3,650,596 + -0.5 3,650,671 - +0.1 3,650,731 + +0.4 3,650,741 - -1.1 3,650,779 + -0.5 3,650,845 + -1.1 3,650,846 - +0.1
Or see this region's nucleotide sequence