Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt emrD and tisB are separated by 279 nucleotides tisB and OKFHMN_15150 are separated by 768 nucleotides
OKFHMN_15135: emrD - multidrug efflux MFS transporter EmrD, at 2,929,498 to 2,930,682
emrD
OKFHMN_15140: tisB - Small toxic protein TisB, at 2,930,962 to 2,931,051
tisB
OKFHMN_15150: OKFHMN_15150 - Acetolactate synthase, at 2,931,820 to 2,933,508
_15150
Position (kb)
2930
2931
2932 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2930.048 kb on + strand, within emrD at 2930.048 kb on + strand, within emrD at 2930.056 kb on - strand, within emrD at 2930.082 kb on + strand, within emrD at 2930.082 kb on + strand, within emrD at 2930.082 kb on + strand, within emrD at 2930.083 kb on - strand, within emrD at 2930.084 kb on + strand, within emrD at 2930.328 kb on + strand, within emrD at 2930.329 kb on - strand, within emrD at 2930.433 kb on + strand, within emrD at 2930.495 kb on + strand, within emrD at 2930.516 kb on + strand, within emrD at 2930.516 kb on + strand, within emrD at 2930.516 kb on + strand, within emrD at 2930.517 kb on - strand, within emrD at 2930.528 kb on + strand, within emrD at 2930.528 kb on + strand, within emrD at 2930.592 kb on + strand at 2930.592 kb on + strand at 2930.601 kb on + strand at 2930.602 kb on - strand at 2930.604 kb on - strand at 2930.604 kb on - strand at 2930.641 kb on + strand at 2930.654 kb on - strand at 2930.670 kb on + strand at 2930.671 kb on - strand at 2930.699 kb on - strand at 2930.715 kb on + strand at 2930.736 kb on - strand at 2930.754 kb on + strand at 2930.754 kb on + strand at 2930.755 kb on - strand at 2930.755 kb on - strand at 2930.755 kb on - strand at 2930.759 kb on + strand at 2930.760 kb on - strand at 2930.780 kb on + strand at 2930.781 kb on - strand at 2930.781 kb on - strand at 2930.783 kb on - strand at 2930.816 kb on + strand at 2930.816 kb on + strand at 2930.820 kb on + strand at 2930.858 kb on + strand at 2930.858 kb on + strand at 2930.858 kb on + strand at 2930.858 kb on + strand at 2930.858 kb on + strand at 2930.907 kb on + strand at 2931.024 kb on + strand, within tisB at 2931.025 kb on - strand, within tisB at 2931.161 kb on + strand at 2931.161 kb on + strand at 2931.161 kb on + strand at 2931.162 kb on - strand at 2931.162 kb on - strand at 2931.253 kb on + strand at 2931.265 kb on + strand at 2931.274 kb on - strand at 2931.274 kb on - strand at 2931.276 kb on + strand at 2931.277 kb on - strand at 2931.277 kb on - strand at 2931.278 kb on + strand at 2931.279 kb on - strand at 2931.402 kb on + strand at 2931.420 kb on - strand at 2931.420 kb on - strand at 2931.420 kb on - strand at 2931.422 kb on + strand at 2931.490 kb on - strand at 2931.499 kb on - strand at 2931.499 kb on - strand at 2931.565 kb on - strand at 2931.578 kb on + strand at 2931.580 kb on + strand at 2931.581 kb on - strand at 2931.621 kb on + strand at 2931.644 kb on + strand at 2931.644 kb on + strand at 2931.647 kb on + strand at 2931.874 kb on - strand at 2931.904 kb on - strand at 2931.933 kb on + strand at 2931.934 kb on - strand at 2931.934 kb on - strand at 2931.934 kb on - strand at 2931.946 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,930,048 + emrD OKFHMN_15135 0.46 -0.0 2,930,048 + emrD OKFHMN_15135 0.46 -0.5 2,930,056 - emrD OKFHMN_15135 0.47 -0.0 2,930,082 + emrD OKFHMN_15135 0.49 +0.4 2,930,082 + emrD OKFHMN_15135 0.49 -0.1 2,930,082 + emrD OKFHMN_15135 0.49 -1.9 2,930,083 - emrD OKFHMN_15135 0.49 -0.1 2,930,084 + emrD OKFHMN_15135 0.49 -0.6 2,930,328 + emrD OKFHMN_15135 0.70 +0.1 2,930,329 - emrD OKFHMN_15135 0.70 -0.1 2,930,433 + emrD OKFHMN_15135 0.79 -0.4 2,930,495 + emrD OKFHMN_15135 0.84 -0.6 2,930,516 + emrD OKFHMN_15135 0.86 -0.2 2,930,516 + emrD OKFHMN_15135 0.86 -0.1 2,930,516 + emrD OKFHMN_15135 0.86 +0.1 2,930,517 - emrD OKFHMN_15135 0.86 -0.5 2,930,528 + emrD OKFHMN_15135 0.87 -0.3 2,930,528 + emrD OKFHMN_15135 0.87 -0.3 2,930,592 + +1.1 2,930,592 + -1.8 2,930,601 + -0.0 2,930,602 - +0.1 2,930,604 - -0.9 2,930,604 - +0.3 2,930,641 + -1.2 2,930,654 - -0.0 2,930,670 + +0.9 2,930,671 - +0.2 2,930,699 - +1.1 2,930,715 + -0.7 2,930,736 - +2.3 2,930,754 + -0.2 2,930,754 + +0.6 2,930,755 - +0.2 2,930,755 - +0.7 2,930,755 - -0.3 2,930,759 + -0.5 2,930,760 - +0.4 2,930,780 + +0.3 2,930,781 - +0.5 2,930,781 - +0.2 2,930,783 - +0.5 2,930,816 + +0.4 2,930,816 + -0.2 2,930,820 + -0.2 2,930,858 + -0.6 2,930,858 + -0.5 2,930,858 + +0.5 2,930,858 + +0.1 2,930,858 + -0.9 2,930,907 + -0.4 2,931,024 + tisB OKFHMN_15140 0.69 +0.4 2,931,025 - tisB OKFHMN_15140 0.70 -0.0 2,931,161 + -0.8 2,931,161 + -0.3 2,931,161 + -0.0 2,931,162 - +0.1 2,931,162 - -3.1 2,931,253 + +0.4 2,931,265 + +0.5 2,931,274 - +0.8 2,931,274 - +3.2 2,931,276 + -1.6 2,931,277 - -0.3 2,931,277 - +0.9 2,931,278 + -0.2 2,931,279 - +1.3 2,931,402 + +0.2 2,931,420 - +0.1 2,931,420 - -1.5 2,931,420 - +0.1 2,931,422 + +0.2 2,931,490 - -3.6 2,931,499 - +0.8 2,931,499 - -4.1 2,931,565 - -1.8 2,931,578 + -0.1 2,931,580 + +0.4 2,931,581 - -1.4 2,931,621 + -1.3 2,931,644 + -2.3 2,931,644 + +0.5 2,931,647 + -0.9 2,931,874 - -3.0 2,931,904 - -0.6 2,931,933 + -1.5 2,931,934 - -1.5 2,931,934 - -0.4 2,931,934 - -1.3 2,931,946 + -0.5
Or see this region's nucleotide sequence