Strain Fitness in Escherichia coli ECRC100 around OKFHMN_15140

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntemrD and tisB are separated by 279 nucleotidestisB and OKFHMN_15150 are separated by 768 nucleotides OKFHMN_15135: emrD - multidrug efflux MFS transporter EmrD, at 2,929,498 to 2,930,682 emrD OKFHMN_15140: tisB - Small toxic protein TisB, at 2,930,962 to 2,931,051 tisB OKFHMN_15150: OKFHMN_15150 - Acetolactate synthase, at 2,931,820 to 2,933,508 _15150 Position (kb) 2930 2931 2932Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2930.048 kb on + strand, within emrDat 2930.048 kb on + strand, within emrDat 2930.056 kb on - strand, within emrDat 2930.082 kb on + strand, within emrDat 2930.082 kb on + strand, within emrDat 2930.082 kb on + strand, within emrDat 2930.083 kb on - strand, within emrDat 2930.084 kb on + strand, within emrDat 2930.328 kb on + strand, within emrDat 2930.329 kb on - strand, within emrDat 2930.433 kb on + strand, within emrDat 2930.495 kb on + strand, within emrDat 2930.516 kb on + strand, within emrDat 2930.516 kb on + strand, within emrDat 2930.516 kb on + strand, within emrDat 2930.517 kb on - strand, within emrDat 2930.528 kb on + strand, within emrDat 2930.528 kb on + strand, within emrDat 2930.592 kb on + strandat 2930.592 kb on + strandat 2930.601 kb on + strandat 2930.602 kb on - strandat 2930.604 kb on - strandat 2930.604 kb on - strandat 2930.641 kb on + strandat 2930.654 kb on - strandat 2930.670 kb on + strandat 2930.671 kb on - strandat 2930.699 kb on - strandat 2930.715 kb on + strandat 2930.736 kb on - strandat 2930.754 kb on + strandat 2930.754 kb on + strandat 2930.755 kb on - strandat 2930.755 kb on - strandat 2930.755 kb on - strandat 2930.759 kb on + strandat 2930.760 kb on - strandat 2930.780 kb on + strandat 2930.781 kb on - strandat 2930.781 kb on - strandat 2930.783 kb on - strandat 2930.816 kb on + strandat 2930.816 kb on + strandat 2930.820 kb on + strandat 2930.858 kb on + strandat 2930.858 kb on + strandat 2930.858 kb on + strandat 2930.858 kb on + strandat 2930.858 kb on + strandat 2930.907 kb on + strandat 2931.024 kb on + strand, within tisBat 2931.025 kb on - strand, within tisBat 2931.161 kb on + strandat 2931.161 kb on + strandat 2931.161 kb on + strandat 2931.162 kb on - strandat 2931.162 kb on - strandat 2931.253 kb on + strandat 2931.265 kb on + strandat 2931.274 kb on - strandat 2931.274 kb on - strandat 2931.276 kb on + strandat 2931.277 kb on - strandat 2931.277 kb on - strandat 2931.278 kb on + strandat 2931.279 kb on - strandat 2931.402 kb on + strandat 2931.420 kb on - strandat 2931.420 kb on - strandat 2931.420 kb on - strandat 2931.422 kb on + strandat 2931.490 kb on - strandat 2931.499 kb on - strandat 2931.499 kb on - strandat 2931.565 kb on - strandat 2931.578 kb on + strandat 2931.580 kb on + strandat 2931.581 kb on - strandat 2931.621 kb on + strandat 2931.644 kb on + strandat 2931.644 kb on + strandat 2931.647 kb on + strandat 2931.874 kb on - strandat 2931.904 kb on - strandat 2931.933 kb on + strandat 2931.934 kb on - strandat 2931.934 kb on - strandat 2931.934 kb on - strandat 2931.946 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,930,048 + emrD OKFHMN_15135 0.46 -0.0
2,930,048 + emrD OKFHMN_15135 0.46 -0.5
2,930,056 - emrD OKFHMN_15135 0.47 -0.0
2,930,082 + emrD OKFHMN_15135 0.49 +0.4
2,930,082 + emrD OKFHMN_15135 0.49 -0.1
2,930,082 + emrD OKFHMN_15135 0.49 -1.9
2,930,083 - emrD OKFHMN_15135 0.49 -0.1
2,930,084 + emrD OKFHMN_15135 0.49 -0.6
2,930,328 + emrD OKFHMN_15135 0.70 +0.1
2,930,329 - emrD OKFHMN_15135 0.70 -0.1
2,930,433 + emrD OKFHMN_15135 0.79 -0.4
2,930,495 + emrD OKFHMN_15135 0.84 -0.6
2,930,516 + emrD OKFHMN_15135 0.86 -0.2
2,930,516 + emrD OKFHMN_15135 0.86 -0.1
2,930,516 + emrD OKFHMN_15135 0.86 +0.1
2,930,517 - emrD OKFHMN_15135 0.86 -0.5
2,930,528 + emrD OKFHMN_15135 0.87 -0.3
2,930,528 + emrD OKFHMN_15135 0.87 -0.3
2,930,592 + +1.1
2,930,592 + -1.8
2,930,601 + -0.0
2,930,602 - +0.1
2,930,604 - -0.9
2,930,604 - +0.3
2,930,641 + -1.2
2,930,654 - -0.0
2,930,670 + +0.9
2,930,671 - +0.2
2,930,699 - +1.1
2,930,715 + -0.7
2,930,736 - +2.3
2,930,754 + -0.2
2,930,754 + +0.6
2,930,755 - +0.2
2,930,755 - +0.7
2,930,755 - -0.3
2,930,759 + -0.5
2,930,760 - +0.4
2,930,780 + +0.3
2,930,781 - +0.5
2,930,781 - +0.2
2,930,783 - +0.5
2,930,816 + +0.4
2,930,816 + -0.2
2,930,820 + -0.2
2,930,858 + -0.6
2,930,858 + -0.5
2,930,858 + +0.5
2,930,858 + +0.1
2,930,858 + -0.9
2,930,907 + -0.4
2,931,024 + tisB OKFHMN_15140 0.69 +0.4
2,931,025 - tisB OKFHMN_15140 0.70 -0.0
2,931,161 + -0.8
2,931,161 + -0.3
2,931,161 + -0.0
2,931,162 - +0.1
2,931,162 - -3.1
2,931,253 + +0.4
2,931,265 + +0.5
2,931,274 - +0.8
2,931,274 - +3.2
2,931,276 + -1.6
2,931,277 - -0.3
2,931,277 - +0.9
2,931,278 + -0.2
2,931,279 - +1.3
2,931,402 + +0.2
2,931,420 - +0.1
2,931,420 - -1.5
2,931,420 - +0.1
2,931,422 + +0.2
2,931,490 - -3.6
2,931,499 - +0.8
2,931,499 - -4.1
2,931,565 - -1.8
2,931,578 + -0.1
2,931,580 + +0.4
2,931,581 - -1.4
2,931,621 + -1.3
2,931,644 + -2.3
2,931,644 + +0.5
2,931,647 + -0.9
2,931,874 - -3.0
2,931,904 - -0.6
2,931,933 + -1.5
2,931,934 - -1.5
2,931,934 - -0.4
2,931,934 - -1.3
2,931,946 + -0.5

Or see this region's nucleotide sequence