Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14970

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnaA and tnaC are separated by 220 nucleotidestnaC and OKFHMN_14975 are separated by 399 nucleotides OKFHMN_14965: tnaA - tryptophanase, at 2,896,225 to 2,897,640 tnaA OKFHMN_14970: tnaC - tryptophanase leader peptide, at 2,897,861 to 2,897,935 tnaC OKFHMN_14975: OKFHMN_14975 - toxin, at 2,898,335 to 2,900,323 _14975 Position (kb) 2897 2898Strain fitness (log2 ratio) -2 -1 0 1 2at 2896.862 kb on + strand, within tnaAat 2896.863 kb on - strand, within tnaAat 2896.869 kb on - strand, within tnaAat 2896.908 kb on - strand, within tnaAat 2896.977 kb on + strand, within tnaAat 2896.978 kb on - strand, within tnaAat 2896.982 kb on + strand, within tnaAat 2897.001 kb on - strand, within tnaAat 2897.070 kb on + strand, within tnaAat 2897.070 kb on + strand, within tnaAat 2897.072 kb on + strand, within tnaAat 2897.072 kb on + strand, within tnaAat 2897.073 kb on - strand, within tnaAat 2897.114 kb on - strand, within tnaAat 2897.161 kb on - strand, within tnaAat 2897.180 kb on + strand, within tnaAat 2897.180 kb on + strand, within tnaAat 2897.181 kb on - strand, within tnaAat 2897.197 kb on - strand, within tnaAat 2897.299 kb on - strand, within tnaAat 2897.299 kb on - strand, within tnaAat 2897.305 kb on + strand, within tnaAat 2897.357 kb on + strand, within tnaAat 2897.364 kb on - strand, within tnaAat 2897.400 kb on - strand, within tnaAat 2897.400 kb on - strand, within tnaAat 2897.400 kb on - strand, within tnaAat 2897.400 kb on - strand, within tnaAat 2897.420 kb on + strand, within tnaAat 2897.454 kb on + strand, within tnaAat 2897.454 kb on + strand, within tnaAat 2897.565 kb on - strandat 2897.577 kb on + strandat 2897.717 kb on + strandat 2897.807 kb on - strandat 2897.918 kb on + strand, within tnaCat 2897.976 kb on - strandat 2898.142 kb on + strandat 2898.142 kb on + strandat 2898.287 kb on - strandat 2898.298 kb on + strandat 2898.299 kb on - strandat 2898.368 kb on - strandat 2898.439 kb on - strandat 2898.633 kb on + strand, within OKFHMN_14975at 2898.694 kb on + strand, within OKFHMN_14975at 2898.885 kb on - strand, within OKFHMN_14975at 2898.906 kb on + strand, within OKFHMN_14975

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,896,862 + tnaA OKFHMN_14965 0.45 +0.1
2,896,863 - tnaA OKFHMN_14965 0.45 -0.1
2,896,869 - tnaA OKFHMN_14965 0.45 +0.4
2,896,908 - tnaA OKFHMN_14965 0.48 +0.0
2,896,977 + tnaA OKFHMN_14965 0.53 +1.2
2,896,978 - tnaA OKFHMN_14965 0.53 +0.0
2,896,982 + tnaA OKFHMN_14965 0.53 +1.6
2,897,001 - tnaA OKFHMN_14965 0.55 +0.0
2,897,070 + tnaA OKFHMN_14965 0.60 +0.1
2,897,070 + tnaA OKFHMN_14965 0.60 +1.4
2,897,072 + tnaA OKFHMN_14965 0.60 -0.8
2,897,072 + tnaA OKFHMN_14965 0.60 +0.2
2,897,073 - tnaA OKFHMN_14965 0.60 +0.1
2,897,114 - tnaA OKFHMN_14965 0.63 -0.4
2,897,161 - tnaA OKFHMN_14965 0.66 +0.7
2,897,180 + tnaA OKFHMN_14965 0.67 +2.2
2,897,180 + tnaA OKFHMN_14965 0.67 -0.1
2,897,181 - tnaA OKFHMN_14965 0.68 -0.3
2,897,197 - tnaA OKFHMN_14965 0.69 -2.4
2,897,299 - tnaA OKFHMN_14965 0.76 -0.3
2,897,299 - tnaA OKFHMN_14965 0.76 -1.4
2,897,305 + tnaA OKFHMN_14965 0.76 -0.1
2,897,357 + tnaA OKFHMN_14965 0.80 +0.2
2,897,364 - tnaA OKFHMN_14965 0.80 +0.1
2,897,400 - tnaA OKFHMN_14965 0.83 -0.4
2,897,400 - tnaA OKFHMN_14965 0.83 +0.2
2,897,400 - tnaA OKFHMN_14965 0.83 +0.9
2,897,400 - tnaA OKFHMN_14965 0.83 -0.0
2,897,420 + tnaA OKFHMN_14965 0.84 +1.0
2,897,454 + tnaA OKFHMN_14965 0.87 +0.4
2,897,454 + tnaA OKFHMN_14965 0.87 -0.9
2,897,565 - -0.1
2,897,577 + -0.6
2,897,717 + +0.1
2,897,807 - -0.7
2,897,918 + tnaC OKFHMN_14970 0.76 +0.3
2,897,976 - -1.0
2,898,142 + +0.2
2,898,142 + +0.8
2,898,287 - -0.8
2,898,298 + -1.1
2,898,299 - -0.9
2,898,368 - -0.8
2,898,439 - +1.2
2,898,633 + OKFHMN_14975 0.15 -0.1
2,898,694 + OKFHMN_14975 0.18 +0.5
2,898,885 - OKFHMN_14975 0.28 +0.9
2,898,906 + OKFHMN_14975 0.29 +0.6

Or see this region's nucleotide sequence