Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnaA and tnaC are separated by 220 nucleotides tnaC and OKFHMN_14975 are separated by 399 nucleotides
OKFHMN_14965: tnaA - tryptophanase, at 2,896,225 to 2,897,640
tnaA
OKFHMN_14970: tnaC - tryptophanase leader peptide, at 2,897,861 to 2,897,935
tnaC
OKFHMN_14975: OKFHMN_14975 - toxin, at 2,898,335 to 2,900,323
_14975
Position (kb)
2897
2898 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2896.862 kb on + strand, within tnaA at 2896.863 kb on - strand, within tnaA at 2896.869 kb on - strand, within tnaA at 2896.908 kb on - strand, within tnaA at 2896.977 kb on + strand, within tnaA at 2896.978 kb on - strand, within tnaA at 2896.982 kb on + strand, within tnaA at 2897.001 kb on - strand, within tnaA at 2897.070 kb on + strand, within tnaA at 2897.070 kb on + strand, within tnaA at 2897.072 kb on + strand, within tnaA at 2897.072 kb on + strand, within tnaA at 2897.073 kb on - strand, within tnaA at 2897.114 kb on - strand, within tnaA at 2897.161 kb on - strand, within tnaA at 2897.180 kb on + strand, within tnaA at 2897.180 kb on + strand, within tnaA at 2897.181 kb on - strand, within tnaA at 2897.197 kb on - strand, within tnaA at 2897.299 kb on - strand, within tnaA at 2897.299 kb on - strand, within tnaA at 2897.305 kb on + strand, within tnaA at 2897.357 kb on + strand, within tnaA at 2897.364 kb on - strand, within tnaA at 2897.400 kb on - strand, within tnaA at 2897.400 kb on - strand, within tnaA at 2897.400 kb on - strand, within tnaA at 2897.400 kb on - strand, within tnaA at 2897.420 kb on + strand, within tnaA at 2897.454 kb on + strand, within tnaA at 2897.454 kb on + strand, within tnaA at 2897.565 kb on - strand at 2897.577 kb on + strand at 2897.717 kb on + strand at 2897.807 kb on - strand at 2897.918 kb on + strand, within tnaC at 2897.976 kb on - strand at 2898.142 kb on + strand at 2898.142 kb on + strand at 2898.287 kb on - strand at 2898.298 kb on + strand at 2898.299 kb on - strand at 2898.368 kb on - strand at 2898.439 kb on - strand at 2898.633 kb on + strand, within OKFHMN_14975 at 2898.694 kb on + strand, within OKFHMN_14975 at 2898.885 kb on - strand, within OKFHMN_14975 at 2898.906 kb on + strand, within OKFHMN_14975
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,896,862 + tnaA OKFHMN_14965 0.45 +0.1 2,896,863 - tnaA OKFHMN_14965 0.45 -0.1 2,896,869 - tnaA OKFHMN_14965 0.45 +0.4 2,896,908 - tnaA OKFHMN_14965 0.48 +0.0 2,896,977 + tnaA OKFHMN_14965 0.53 +1.2 2,896,978 - tnaA OKFHMN_14965 0.53 +0.0 2,896,982 + tnaA OKFHMN_14965 0.53 +1.6 2,897,001 - tnaA OKFHMN_14965 0.55 +0.0 2,897,070 + tnaA OKFHMN_14965 0.60 +0.1 2,897,070 + tnaA OKFHMN_14965 0.60 +1.4 2,897,072 + tnaA OKFHMN_14965 0.60 -0.8 2,897,072 + tnaA OKFHMN_14965 0.60 +0.2 2,897,073 - tnaA OKFHMN_14965 0.60 +0.1 2,897,114 - tnaA OKFHMN_14965 0.63 -0.4 2,897,161 - tnaA OKFHMN_14965 0.66 +0.7 2,897,180 + tnaA OKFHMN_14965 0.67 +2.2 2,897,180 + tnaA OKFHMN_14965 0.67 -0.1 2,897,181 - tnaA OKFHMN_14965 0.68 -0.3 2,897,197 - tnaA OKFHMN_14965 0.69 -2.4 2,897,299 - tnaA OKFHMN_14965 0.76 -0.3 2,897,299 - tnaA OKFHMN_14965 0.76 -1.4 2,897,305 + tnaA OKFHMN_14965 0.76 -0.1 2,897,357 + tnaA OKFHMN_14965 0.80 +0.2 2,897,364 - tnaA OKFHMN_14965 0.80 +0.1 2,897,400 - tnaA OKFHMN_14965 0.83 -0.4 2,897,400 - tnaA OKFHMN_14965 0.83 +0.2 2,897,400 - tnaA OKFHMN_14965 0.83 +0.9 2,897,400 - tnaA OKFHMN_14965 0.83 -0.0 2,897,420 + tnaA OKFHMN_14965 0.84 +1.0 2,897,454 + tnaA OKFHMN_14965 0.87 +0.4 2,897,454 + tnaA OKFHMN_14965 0.87 -0.9 2,897,565 - -0.1 2,897,577 + -0.6 2,897,717 + +0.1 2,897,807 - -0.7 2,897,918 + tnaC OKFHMN_14970 0.76 +0.3 2,897,976 - -1.0 2,898,142 + +0.2 2,898,142 + +0.8 2,898,287 - -0.8 2,898,298 + -1.1 2,898,299 - -0.9 2,898,368 - -0.8 2,898,439 - +1.2 2,898,633 + OKFHMN_14975 0.15 -0.1 2,898,694 + OKFHMN_14975 0.18 +0.5 2,898,885 - OKFHMN_14975 0.28 +0.9 2,898,906 + OKFHMN_14975 0.29 +0.6
Or see this region's nucleotide sequence