Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14710

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt23S_rrna and Glu_trna are separated by 193 nucleotidesGlu_trna and 16S_rrna are separated by 85 nucleotides16S_rrna and yieP are separated by 480 nucleotides OKFHMN_14695: 23S_rrna - 23S ribosomal RNA, at 2,835,028 to 2,837,932 _rrna OKFHMN_14705: Glu_trna - tRNA-Glu(ttc), at 2,838,126 to 2,838,201 _trna OKFHMN_14710: 16S_rrna - 16S ribosomal RNA, at 2,838,287 to 2,839,828 _rrna OKFHMN_14715: yieP - Uncharacterized HTH-type transcriptional regulator YieP, at 2,840,309 to 2,841,001 yieP Position (kb) 2838 2839 2840Strain fitness (log2 ratio) -3 -2 -1 0 1at 2840.220 kb on + strandat 2840.272 kb on + strandat 2840.273 kb on - strandat 2840.273 kb on - strandat 2840.275 kb on + strandat 2840.275 kb on + strandat 2840.275 kb on + strandat 2840.276 kb on - strandat 2840.276 kb on - strandat 2840.276 kb on - strandat 2840.285 kb on + strandat 2840.286 kb on - strandat 2840.305 kb on - strandat 2840.305 kb on - strandat 2840.308 kb on - strandat 2840.331 kb on + strandat 2840.332 kb on - strandat 2840.354 kb on + strandat 2840.354 kb on + strandat 2840.354 kb on + strandat 2840.355 kb on - strandat 2840.355 kb on - strandat 2840.388 kb on + strand, within yiePat 2840.388 kb on + strand, within yiePat 2840.399 kb on + strand, within yiePat 2840.461 kb on + strand, within yiePat 2840.462 kb on - strand, within yiePat 2840.462 kb on - strand, within yiePat 2840.531 kb on - strand, within yiePat 2840.582 kb on - strand, within yiePat 2840.635 kb on + strand, within yiePat 2840.635 kb on + strand, within yiePat 2840.641 kb on + strand, within yiePat 2840.641 kb on + strand, within yiePat 2840.642 kb on - strand, within yiePat 2840.667 kb on + strand, within yiePat 2840.713 kb on + strand, within yiePat 2840.713 kb on + strand, within yiePat 2840.714 kb on - strand, within yiePat 2840.718 kb on + strand, within yiePat 2840.779 kb on + strand, within yiePat 2840.797 kb on + strand, within yiePat 2840.798 kb on - strand, within yiePat 2840.798 kb on - strand, within yiePat 2840.802 kb on - strand, within yiePat 2840.802 kb on - strand, within yiePat 2840.802 kb on - strand, within yieP

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,840,220 + -1.4
2,840,272 + +1.2
2,840,273 - +0.2
2,840,273 - -0.8
2,840,275 + -0.1
2,840,275 + -0.2
2,840,275 + +0.3
2,840,276 - -0.1
2,840,276 - +0.3
2,840,276 - +0.6
2,840,285 + -0.2
2,840,286 - -0.7
2,840,305 - +0.2
2,840,305 - -0.9
2,840,308 - -0.2
2,840,331 + -1.3
2,840,332 - -2.4
2,840,354 + -0.0
2,840,354 + +0.3
2,840,354 + -0.4
2,840,355 - +0.3
2,840,355 - +0.7
2,840,388 + yieP OKFHMN_14715 0.11 +0.4
2,840,388 + yieP OKFHMN_14715 0.11 -1.1
2,840,399 + yieP OKFHMN_14715 0.13 +0.8
2,840,461 + yieP OKFHMN_14715 0.22 +0.1
2,840,462 - yieP OKFHMN_14715 0.22 +1.0
2,840,462 - yieP OKFHMN_14715 0.22 +0.6
2,840,531 - yieP OKFHMN_14715 0.32 +1.0
2,840,582 - yieP OKFHMN_14715 0.39 +0.1
2,840,635 + yieP OKFHMN_14715 0.47 +0.6
2,840,635 + yieP OKFHMN_14715 0.47 +0.3
2,840,641 + yieP OKFHMN_14715 0.48 +0.1
2,840,641 + yieP OKFHMN_14715 0.48 -0.1
2,840,642 - yieP OKFHMN_14715 0.48 -1.0
2,840,667 + yieP OKFHMN_14715 0.52 +0.2
2,840,713 + yieP OKFHMN_14715 0.58 -0.1
2,840,713 + yieP OKFHMN_14715 0.58 -0.6
2,840,714 - yieP OKFHMN_14715 0.58 -3.7
2,840,718 + yieP OKFHMN_14715 0.59 +0.5
2,840,779 + yieP OKFHMN_14715 0.68 +0.7
2,840,797 + yieP OKFHMN_14715 0.70 -0.7
2,840,798 - yieP OKFHMN_14715 0.71 -0.1
2,840,798 - yieP OKFHMN_14715 0.71 +1.2
2,840,802 - yieP OKFHMN_14715 0.71 -0.4
2,840,802 - yieP OKFHMN_14715 0.71 +1.1
2,840,802 - yieP OKFHMN_14715 0.71 -1.2

Or see this region's nucleotide sequence