Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pflD and frwB are separated by 50 nucleotides frwB and frwC are separated by 14 nucleotides
OKFHMN_13620: pflD - formate C-acetyltransferase, at 2,621,868 to 2,624,165
pflD
OKFHMN_13625: frwB - PTS fructose-like transporter subunit IIB, at 2,624,216 to 2,624,536
frwB
OKFHMN_13630: frwC - PTS fructose transporter subunit EIIC, at 2,624,551 to 2,625,630
frwC
Position (kb)
2624
2625 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2623.327 kb on + strand, within pflD at 2623.340 kb on + strand, within pflD at 2623.340 kb on + strand, within pflD at 2623.340 kb on + strand, within pflD at 2623.340 kb on + strand, within pflD at 2623.340 kb on + strand, within pflD at 2623.340 kb on + strand, within pflD at 2623.340 kb on + strand, within pflD at 2623.341 kb on - strand, within pflD at 2623.341 kb on - strand, within pflD at 2623.341 kb on - strand, within pflD at 2623.341 kb on - strand, within pflD at 2623.343 kb on - strand, within pflD at 2623.408 kb on + strand, within pflD at 2623.408 kb on + strand, within pflD at 2623.417 kb on - strand, within pflD at 2623.691 kb on + strand, within pflD at 2623.691 kb on + strand, within pflD at 2623.691 kb on + strand, within pflD at 2623.694 kb on + strand, within pflD at 2623.838 kb on + strand, within pflD at 2623.838 kb on + strand, within pflD at 2623.838 kb on + strand, within pflD at 2623.839 kb on - strand, within pflD at 2623.839 kb on - strand, within pflD at 2623.845 kb on - strand, within pflD at 2623.859 kb on + strand, within pflD at 2624.020 kb on + strand at 2624.020 kb on + strand at 2624.020 kb on + strand at 2624.021 kb on - strand at 2624.021 kb on - strand at 2624.046 kb on + strand at 2624.086 kb on + strand at 2624.086 kb on + strand at 2624.087 kb on - strand at 2624.154 kb on - strand at 2624.154 kb on - strand at 2624.217 kb on + strand at 2624.254 kb on + strand, within frwB at 2624.348 kb on - strand, within frwB at 2624.482 kb on + strand, within frwB at 2624.482 kb on + strand, within frwB at 2624.483 kb on - strand, within frwB at 2624.483 kb on - strand, within frwB at 2624.483 kb on - strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.488 kb on + strand, within frwB at 2624.489 kb on - strand, within frwB at 2624.489 kb on - strand, within frwB at 2624.552 kb on + strand at 2624.552 kb on + strand at 2624.599 kb on - strand at 2624.682 kb on + strand, within frwC at 2624.682 kb on + strand, within frwC at 2624.684 kb on + strand, within frwC at 2624.695 kb on - strand, within frwC at 2624.767 kb on + strand, within frwC at 2624.767 kb on + strand, within frwC at 2624.768 kb on - strand, within frwC at 2624.768 kb on - strand, within frwC at 2624.768 kb on - strand, within frwC at 2624.807 kb on - strand, within frwC at 2624.807 kb on - strand, within frwC at 2624.807 kb on - strand, within frwC at 2624.813 kb on - strand, within frwC at 2624.991 kb on + strand, within frwC at 2624.992 kb on - strand, within frwC at 2624.994 kb on - strand, within frwC at 2624.994 kb on - strand, within frwC at 2624.994 kb on - strand, within frwC at 2625.096 kb on + strand, within frwC at 2625.157 kb on + strand, within frwC at 2625.157 kb on + strand, within frwC at 2625.253 kb on - strand, within frwC at 2625.275 kb on + strand, within frwC at 2625.512 kb on + strand, within frwC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,623,327 + pflD OKFHMN_13620 0.63 -0.9 2,623,340 + pflD OKFHMN_13620 0.64 -0.9 2,623,340 + pflD OKFHMN_13620 0.64 -0.7 2,623,340 + pflD OKFHMN_13620 0.64 -0.2 2,623,340 + pflD OKFHMN_13620 0.64 -1.7 2,623,340 + pflD OKFHMN_13620 0.64 -0.5 2,623,340 + pflD OKFHMN_13620 0.64 +0.6 2,623,340 + pflD OKFHMN_13620 0.64 +0.2 2,623,341 - pflD OKFHMN_13620 0.64 -0.7 2,623,341 - pflD OKFHMN_13620 0.64 -0.2 2,623,341 - pflD OKFHMN_13620 0.64 -0.6 2,623,341 - pflD OKFHMN_13620 0.64 +0.4 2,623,343 - pflD OKFHMN_13620 0.64 -0.3 2,623,408 + pflD OKFHMN_13620 0.67 +0.0 2,623,408 + pflD OKFHMN_13620 0.67 -1.1 2,623,417 - pflD OKFHMN_13620 0.67 +0.5 2,623,691 + pflD OKFHMN_13620 0.79 +0.4 2,623,691 + pflD OKFHMN_13620 0.79 +0.7 2,623,691 + pflD OKFHMN_13620 0.79 -0.6 2,623,694 + pflD OKFHMN_13620 0.79 -1.2 2,623,838 + pflD OKFHMN_13620 0.86 +0.4 2,623,838 + pflD OKFHMN_13620 0.86 -0.1 2,623,838 + pflD OKFHMN_13620 0.86 +1.2 2,623,839 - pflD OKFHMN_13620 0.86 +0.5 2,623,839 - pflD OKFHMN_13620 0.86 +0.3 2,623,845 - pflD OKFHMN_13620 0.86 +0.8 2,623,859 + pflD OKFHMN_13620 0.87 -0.5 2,624,020 + +0.1 2,624,020 + -0.1 2,624,020 + +0.5 2,624,021 - -0.7 2,624,021 - +0.0 2,624,046 + +0.0 2,624,086 + +1.9 2,624,086 + +0.3 2,624,087 - +0.3 2,624,154 - +0.8 2,624,154 - +0.1 2,624,217 + -0.4 2,624,254 + frwB OKFHMN_13625 0.12 -0.7 2,624,348 - frwB OKFHMN_13625 0.41 +1.1 2,624,482 + frwB OKFHMN_13625 0.83 +0.2 2,624,482 + frwB OKFHMN_13625 0.83 +0.1 2,624,483 - frwB OKFHMN_13625 0.83 -0.6 2,624,483 - frwB OKFHMN_13625 0.83 -1.7 2,624,483 - frwB OKFHMN_13625 0.83 +0.4 2,624,484 + frwB OKFHMN_13625 0.83 +0.4 2,624,484 + frwB OKFHMN_13625 0.83 +0.3 2,624,484 + frwB OKFHMN_13625 0.83 +0.6 2,624,484 + frwB OKFHMN_13625 0.83 +0.3 2,624,484 + frwB OKFHMN_13625 0.83 -2.9 2,624,484 + frwB OKFHMN_13625 0.83 +0.8 2,624,484 + frwB OKFHMN_13625 0.83 +0.8 2,624,484 + frwB OKFHMN_13625 0.83 +0.3 2,624,484 + frwB OKFHMN_13625 0.83 +0.3 2,624,484 + frwB OKFHMN_13625 0.83 +0.5 2,624,484 + frwB OKFHMN_13625 0.83 +0.1 2,624,485 - frwB OKFHMN_13625 0.84 -1.3 2,624,485 - frwB OKFHMN_13625 0.84 +0.5 2,624,485 - frwB OKFHMN_13625 0.84 +1.0 2,624,485 - frwB OKFHMN_13625 0.84 -1.0 2,624,485 - frwB OKFHMN_13625 0.84 +0.2 2,624,485 - frwB OKFHMN_13625 0.84 -0.0 2,624,485 - frwB OKFHMN_13625 0.84 +0.2 2,624,485 - frwB OKFHMN_13625 0.84 +0.3 2,624,485 - frwB OKFHMN_13625 0.84 -0.2 2,624,485 - frwB OKFHMN_13625 0.84 -0.2 2,624,485 - frwB OKFHMN_13625 0.84 +0.2 2,624,485 - frwB OKFHMN_13625 0.84 +0.2 2,624,485 - frwB OKFHMN_13625 0.84 -0.1 2,624,485 - frwB OKFHMN_13625 0.84 -0.4 2,624,488 + frwB OKFHMN_13625 0.85 +0.6 2,624,489 - frwB OKFHMN_13625 0.85 +0.1 2,624,489 - frwB OKFHMN_13625 0.85 +0.4 2,624,552 + +0.1 2,624,552 + -0.4 2,624,599 - +0.3 2,624,682 + frwC OKFHMN_13630 0.12 +0.2 2,624,682 + frwC OKFHMN_13630 0.12 +1.1 2,624,684 + frwC OKFHMN_13630 0.12 -0.5 2,624,695 - frwC OKFHMN_13630 0.13 +0.0 2,624,767 + frwC OKFHMN_13630 0.20 -0.6 2,624,767 + frwC OKFHMN_13630 0.20 -1.4 2,624,768 - frwC OKFHMN_13630 0.20 -0.2 2,624,768 - frwC OKFHMN_13630 0.20 +0.6 2,624,768 - frwC OKFHMN_13630 0.20 +0.4 2,624,807 - frwC OKFHMN_13630 0.24 -4.0 2,624,807 - frwC OKFHMN_13630 0.24 +0.2 2,624,807 - frwC OKFHMN_13630 0.24 +0.0 2,624,813 - frwC OKFHMN_13630 0.24 +0.5 2,624,991 + frwC OKFHMN_13630 0.41 +0.6 2,624,992 - frwC OKFHMN_13630 0.41 -1.2 2,624,994 - frwC OKFHMN_13630 0.41 +0.7 2,624,994 - frwC OKFHMN_13630 0.41 +0.0 2,624,994 - frwC OKFHMN_13630 0.41 -0.3 2,625,096 + frwC OKFHMN_13630 0.50 +0.0 2,625,157 + frwC OKFHMN_13630 0.56 -0.1 2,625,157 + frwC OKFHMN_13630 0.56 -0.6 2,625,253 - frwC OKFHMN_13630 0.65 -0.8 2,625,275 + frwC OKFHMN_13630 0.67 +0.3 2,625,512 + frwC OKFHMN_13630 0.89 +0.1
Or see this region's nucleotide sequence