Strain Fitness in Escherichia coli ECRC100 around OKFHMN_13605

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntibeC and yijO are separated by 214 nucleotidesyijO and frwD overlap by 14 nucleotidesfrwD and pflC are separated by 1 nucleotides OKFHMN_13600: ibeC - phosphoethanolamine transferase CptA, at 2,617,895 to 2,619,628 ibeC OKFHMN_13605: yijO - Uncharacterized HTH-type transcriptional regulator YijO, at 2,619,843 to 2,620,694 yijO OKFHMN_13610: frwD - PTS fructose-like transporter subunit IIB, at 2,620,681 to 2,621,022 frwD OKFHMN_13615: pflC - [formate-C-acetyltransferase]-activating enzyme, at 2,621,024 to 2,621,902 pflC Position (kb) 2619 2620 2621Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2618.859 kb on - strand, within ibeCat 2618.860 kb on + strand, within ibeCat 2618.860 kb on + strand, within ibeCat 2618.860 kb on + strand, within ibeCat 2618.945 kb on + strand, within ibeCat 2618.945 kb on + strand, within ibeCat 2618.946 kb on - strand, within ibeCat 2618.948 kb on + strand, within ibeCat 2618.948 kb on + strand, within ibeCat 2618.949 kb on - strand, within ibeCat 2618.965 kb on + strand, within ibeCat 2618.965 kb on + strand, within ibeCat 2618.965 kb on + strand, within ibeCat 2618.984 kb on + strand, within ibeCat 2618.992 kb on + strand, within ibeCat 2618.993 kb on - strand, within ibeCat 2618.993 kb on - strand, within ibeCat 2619.080 kb on + strand, within ibeCat 2619.080 kb on + strand, within ibeCat 2619.080 kb on + strand, within ibeCat 2619.170 kb on + strand, within ibeCat 2619.170 kb on + strand, within ibeCat 2619.170 kb on + strand, within ibeCat 2619.171 kb on - strand, within ibeCat 2619.171 kb on - strand, within ibeCat 2619.173 kb on - strand, within ibeCat 2619.173 kb on - strand, within ibeCat 2619.173 kb on - strand, within ibeCat 2619.197 kb on + strand, within ibeCat 2619.199 kb on + strand, within ibeCat 2619.200 kb on - strand, within ibeCat 2619.236 kb on - strand, within ibeCat 2619.267 kb on - strand, within ibeCat 2619.349 kb on + strand, within ibeCat 2619.349 kb on + strand, within ibeCat 2619.349 kb on + strand, within ibeCat 2619.350 kb on - strand, within ibeCat 2619.350 kb on - strand, within ibeCat 2619.350 kb on - strand, within ibeCat 2619.350 kb on - strand, within ibeCat 2619.350 kb on - strand, within ibeCat 2619.350 kb on - strand, within ibeCat 2619.353 kb on + strand, within ibeCat 2619.353 kb on + strand, within ibeCat 2619.353 kb on + strand, within ibeCat 2619.353 kb on + strand, within ibeCat 2619.354 kb on - strand, within ibeCat 2619.354 kb on - strand, within ibeCat 2619.354 kb on - strand, within ibeCat 2619.434 kb on - strand, within ibeCat 2619.438 kb on - strand, within ibeCat 2619.438 kb on - strand, within ibeCat 2619.483 kb on + strandat 2619.484 kb on - strandat 2619.497 kb on + strandat 2619.602 kb on + strandat 2619.603 kb on - strandat 2619.615 kb on + strandat 2619.619 kb on + strandat 2619.620 kb on - strandat 2619.733 kb on + strandat 2619.733 kb on + strandat 2619.832 kb on - strandat 2619.832 kb on - strandat 2619.840 kb on - strandat 2619.847 kb on - strandat 2619.861 kb on + strandat 2619.862 kb on - strandat 2619.862 kb on - strandat 2619.862 kb on - strandat 2619.862 kb on - strandat 2620.021 kb on + strand, within yijOat 2620.041 kb on + strand, within yijOat 2620.041 kb on + strand, within yijOat 2620.042 kb on - strand, within yijOat 2620.042 kb on - strand, within yijOat 2620.089 kb on - strand, within yijOat 2620.089 kb on - strand, within yijOat 2620.097 kb on + strand, within yijOat 2620.204 kb on + strand, within yijOat 2620.362 kb on - strand, within yijOat 2620.362 kb on - strand, within yijOat 2620.374 kb on - strand, within yijOat 2620.374 kb on - strand, within yijOat 2620.387 kb on - strand, within yijOat 2620.387 kb on - strand, within yijOat 2620.428 kb on + strand, within yijOat 2620.428 kb on + strand, within yijOat 2620.428 kb on + strand, within yijOat 2620.429 kb on - strand, within yijOat 2620.431 kb on - strand, within yijOat 2620.443 kb on + strand, within yijOat 2620.443 kb on + strand, within yijOat 2620.443 kb on + strand, within yijOat 2620.444 kb on - strand, within yijOat 2620.485 kb on - strand, within yijOat 2620.520 kb on + strand, within yijOat 2620.521 kb on - strand, within yijOat 2620.521 kb on - strand, within yijOat 2620.521 kb on - strand, within yijOat 2620.540 kb on - strand, within yijOat 2620.552 kb on + strand, within yijOat 2620.641 kb on + strandat 2620.692 kb on + strandat 2620.693 kb on - strandat 2620.693 kb on - strandat 2620.770 kb on - strand, within frwDat 2620.968 kb on + strand, within frwDat 2620.968 kb on + strand, within frwDat 2620.969 kb on - strand, within frwDat 2620.969 kb on - strand, within frwDat 2620.969 kb on - strand, within frwDat 2620.969 kb on - strand, within frwDat 2620.969 kb on - strand, within frwDat 2620.969 kb on - strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.974 kb on + strand, within frwDat 2620.974 kb on + strand, within frwDat 2620.975 kb on - strand, within frwDat 2620.975 kb on - strand, within frwDat 2621.016 kb on - strandat 2621.025 kb on + strandat 2621.375 kb on + strand, within pflC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,618,859 - ibeC OKFHMN_13600 0.56 +0.2
2,618,860 + ibeC OKFHMN_13600 0.56 +0.5
2,618,860 + ibeC OKFHMN_13600 0.56 -0.2
2,618,860 + ibeC OKFHMN_13600 0.56 -0.2
2,618,945 + ibeC OKFHMN_13600 0.61 +0.1
2,618,945 + ibeC OKFHMN_13600 0.61 +0.5
2,618,946 - ibeC OKFHMN_13600 0.61 -0.6
2,618,948 + ibeC OKFHMN_13600 0.61 +0.2
2,618,948 + ibeC OKFHMN_13600 0.61 +0.2
2,618,949 - ibeC OKFHMN_13600 0.61 -0.6
2,618,965 + ibeC OKFHMN_13600 0.62 +2.2
2,618,965 + ibeC OKFHMN_13600 0.62 +0.2
2,618,965 + ibeC OKFHMN_13600 0.62 -0.4
2,618,984 + ibeC OKFHMN_13600 0.63 +0.3
2,618,992 + ibeC OKFHMN_13600 0.63 +0.8
2,618,993 - ibeC OKFHMN_13600 0.63 -1.5
2,618,993 - ibeC OKFHMN_13600 0.63 +0.4
2,619,080 + ibeC OKFHMN_13600 0.68 -0.0
2,619,080 + ibeC OKFHMN_13600 0.68 -0.1
2,619,080 + ibeC OKFHMN_13600 0.68 -0.0
2,619,170 + ibeC OKFHMN_13600 0.74 +0.0
2,619,170 + ibeC OKFHMN_13600 0.74 +0.2
2,619,170 + ibeC OKFHMN_13600 0.74 +0.6
2,619,171 - ibeC OKFHMN_13600 0.74 -0.2
2,619,171 - ibeC OKFHMN_13600 0.74 +0.8
2,619,173 - ibeC OKFHMN_13600 0.74 -2.2
2,619,173 - ibeC OKFHMN_13600 0.74 -0.7
2,619,173 - ibeC OKFHMN_13600 0.74 +0.4
2,619,197 + ibeC OKFHMN_13600 0.75 -1.4
2,619,199 + ibeC OKFHMN_13600 0.75 -0.0
2,619,200 - ibeC OKFHMN_13600 0.75 -0.6
2,619,236 - ibeC OKFHMN_13600 0.77 +0.1
2,619,267 - ibeC OKFHMN_13600 0.79 -1.1
2,619,349 + ibeC OKFHMN_13600 0.84 +0.5
2,619,349 + ibeC OKFHMN_13600 0.84 +0.1
2,619,349 + ibeC OKFHMN_13600 0.84 -0.2
2,619,350 - ibeC OKFHMN_13600 0.84 +1.4
2,619,350 - ibeC OKFHMN_13600 0.84 -0.1
2,619,350 - ibeC OKFHMN_13600 0.84 +0.8
2,619,350 - ibeC OKFHMN_13600 0.84 -0.1
2,619,350 - ibeC OKFHMN_13600 0.84 +0.5
2,619,350 - ibeC OKFHMN_13600 0.84 -1.6
2,619,353 + ibeC OKFHMN_13600 0.84 -0.2
2,619,353 + ibeC OKFHMN_13600 0.84 +0.1
2,619,353 + ibeC OKFHMN_13600 0.84 +0.0
2,619,353 + ibeC OKFHMN_13600 0.84 -0.9
2,619,354 - ibeC OKFHMN_13600 0.84 +1.4
2,619,354 - ibeC OKFHMN_13600 0.84 +0.1
2,619,354 - ibeC OKFHMN_13600 0.84 -0.0
2,619,434 - ibeC OKFHMN_13600 0.89 -1.1
2,619,438 - ibeC OKFHMN_13600 0.89 +0.5
2,619,438 - ibeC OKFHMN_13600 0.89 +0.1
2,619,483 + +0.7
2,619,484 - +0.1
2,619,497 + +0.3
2,619,602 + -0.6
2,619,603 - +0.3
2,619,615 + -0.2
2,619,619 + -0.0
2,619,620 - +0.4
2,619,733 + +0.2
2,619,733 + -0.8
2,619,832 - +0.1
2,619,832 - -0.0
2,619,840 - -0.1
2,619,847 - -2.1
2,619,861 + -0.1
2,619,862 - -0.3
2,619,862 - +0.2
2,619,862 - -0.3
2,619,862 - -1.5
2,620,021 + yijO OKFHMN_13605 0.21 -1.9
2,620,041 + yijO OKFHMN_13605 0.23 +0.8
2,620,041 + yijO OKFHMN_13605 0.23 +0.4
2,620,042 - yijO OKFHMN_13605 0.23 +1.4
2,620,042 - yijO OKFHMN_13605 0.23 +0.3
2,620,089 - yijO OKFHMN_13605 0.29 -0.6
2,620,089 - yijO OKFHMN_13605 0.29 +0.7
2,620,097 + yijO OKFHMN_13605 0.30 +0.1
2,620,204 + yijO OKFHMN_13605 0.42 +1.0
2,620,362 - yijO OKFHMN_13605 0.61 -0.7
2,620,362 - yijO OKFHMN_13605 0.61 +0.3
2,620,374 - yijO OKFHMN_13605 0.62 -2.4
2,620,374 - yijO OKFHMN_13605 0.62 -0.7
2,620,387 - yijO OKFHMN_13605 0.64 -0.0
2,620,387 - yijO OKFHMN_13605 0.64 +1.3
2,620,428 + yijO OKFHMN_13605 0.69 +0.1
2,620,428 + yijO OKFHMN_13605 0.69 -1.0
2,620,428 + yijO OKFHMN_13605 0.69 +0.4
2,620,429 - yijO OKFHMN_13605 0.69 +0.4
2,620,431 - yijO OKFHMN_13605 0.69 -0.3
2,620,443 + yijO OKFHMN_13605 0.70 -0.0
2,620,443 + yijO OKFHMN_13605 0.70 -0.4
2,620,443 + yijO OKFHMN_13605 0.70 -0.5
2,620,444 - yijO OKFHMN_13605 0.71 +0.1
2,620,485 - yijO OKFHMN_13605 0.75 -0.3
2,620,520 + yijO OKFHMN_13605 0.79 -3.1
2,620,521 - yijO OKFHMN_13605 0.80 -0.2
2,620,521 - yijO OKFHMN_13605 0.80 +1.3
2,620,521 - yijO OKFHMN_13605 0.80 -0.2
2,620,540 - yijO OKFHMN_13605 0.82 -0.4
2,620,552 + yijO OKFHMN_13605 0.83 -0.1
2,620,641 + +0.4
2,620,692 + -0.1
2,620,693 - +0.8
2,620,693 - -0.5
2,620,770 - frwD OKFHMN_13610 0.26 +0.3
2,620,968 + frwD OKFHMN_13610 0.84 -0.2
2,620,968 + frwD OKFHMN_13610 0.84 -0.5
2,620,969 - frwD OKFHMN_13610 0.84 -0.7
2,620,969 - frwD OKFHMN_13610 0.84 -0.2
2,620,969 - frwD OKFHMN_13610 0.84 +0.3
2,620,969 - frwD OKFHMN_13610 0.84 +0.3
2,620,969 - frwD OKFHMN_13610 0.84 +0.7
2,620,969 - frwD OKFHMN_13610 0.84 -1.1
2,620,970 + frwD OKFHMN_13610 0.85 +0.3
2,620,970 + frwD OKFHMN_13610 0.85 -0.4
2,620,970 + frwD OKFHMN_13610 0.85 -0.5
2,620,970 + frwD OKFHMN_13610 0.85 +0.5
2,620,970 + frwD OKFHMN_13610 0.85 +0.7
2,620,970 + frwD OKFHMN_13610 0.85 +2.6
2,620,970 + frwD OKFHMN_13610 0.85 +0.1
2,620,970 + frwD OKFHMN_13610 0.85 -0.3
2,620,970 + frwD OKFHMN_13610 0.85 -0.2
2,620,970 + frwD OKFHMN_13610 0.85 +0.1
2,620,970 + frwD OKFHMN_13610 0.85 +0.3
2,620,971 - frwD OKFHMN_13610 0.85 -1.4
2,620,971 - frwD OKFHMN_13610 0.85 +0.2
2,620,971 - frwD OKFHMN_13610 0.85 -0.1
2,620,971 - frwD OKFHMN_13610 0.85 +0.3
2,620,971 - frwD OKFHMN_13610 0.85 -1.2
2,620,971 - frwD OKFHMN_13610 0.85 +0.2
2,620,971 - frwD OKFHMN_13610 0.85 +0.1
2,620,971 - frwD OKFHMN_13610 0.85 +0.7
2,620,971 - frwD OKFHMN_13610 0.85 +0.4
2,620,974 + frwD OKFHMN_13610 0.86 -2.0
2,620,974 + frwD OKFHMN_13610 0.86 +0.2
2,620,975 - frwD OKFHMN_13610 0.86 +0.2
2,620,975 - frwD OKFHMN_13610 0.86 -0.5
2,621,016 - +1.0
2,621,025 + -0.2
2,621,375 + pflC OKFHMN_13615 0.40 -0.7

Or see this region's nucleotide sequence