Strain Fitness in Escherichia coli ECRC100 around OKFHMN_13410

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntthiH and OKFHMN_13410 are separated by 434 nucleotidesOKFHMN_13410 and rpoC are separated by 212 nucleotides OKFHMN_13400: thiH - 2-iminoacetate synthase ThiH, at 2,574,349 to 2,575,482 thiH OKFHMN_13410: OKFHMN_13410 - stationary phase growth adaptation protein, at 2,575,917 to 2,576,360 _13410 OKFHMN_13415: rpoC - DNA-directed RNA polymerase subunit beta', at 2,576,573 to 2,580,796 rpoC Position (kb) 2575 2576 2577Strain fitness (log2 ratio) -2 -1 0 1 2at 2575.003 kb on - strand, within thiHat 2575.007 kb on + strand, within thiHat 2575.023 kb on - strand, within thiHat 2575.057 kb on + strand, within thiHat 2575.057 kb on + strand, within thiHat 2575.058 kb on - strand, within thiHat 2575.058 kb on - strand, within thiHat 2575.059 kb on + strand, within thiHat 2575.097 kb on - strand, within thiHat 2575.111 kb on + strand, within thiHat 2575.144 kb on - strand, within thiHat 2575.188 kb on - strand, within thiHat 2575.293 kb on + strand, within thiHat 2575.294 kb on - strand, within thiHat 2575.453 kb on + strandat 2575.453 kb on + strandat 2575.454 kb on - strandat 2575.454 kb on - strandat 2575.454 kb on - strandat 2575.479 kb on - strandat 2575.492 kb on + strandat 2575.492 kb on + strandat 2575.492 kb on + strandat 2575.493 kb on - strandat 2575.698 kb on + strandat 2575.699 kb on - strandat 2575.706 kb on + strandat 2575.707 kb on - strandat 2575.707 kb on - strandat 2575.710 kb on + strandat 2575.718 kb on + strandat 2575.719 kb on - strandat 2575.855 kb on + strandat 2575.878 kb on + strandat 2575.878 kb on + strandat 2575.919 kb on - strandat 2576.004 kb on + strand, within OKFHMN_13410at 2576.005 kb on - strand, within OKFHMN_13410at 2576.026 kb on + strand, within OKFHMN_13410at 2576.026 kb on + strand, within OKFHMN_13410at 2576.026 kb on + strand, within OKFHMN_13410at 2576.026 kb on + strand, within OKFHMN_13410at 2576.027 kb on - strand, within OKFHMN_13410at 2576.027 kb on - strand, within OKFHMN_13410at 2576.027 kb on - strand, within OKFHMN_13410at 2576.027 kb on - strand, within OKFHMN_13410at 2576.027 kb on - strand, within OKFHMN_13410at 2576.027 kb on - strand, within OKFHMN_13410at 2576.027 kb on - strand, within OKFHMN_13410at 2576.030 kb on + strand, within OKFHMN_13410at 2576.030 kb on + strand, within OKFHMN_13410at 2576.030 kb on + strand, within OKFHMN_13410at 2576.030 kb on + strand, within OKFHMN_13410at 2576.030 kb on + strand, within OKFHMN_13410at 2576.030 kb on + strand, within OKFHMN_13410at 2576.031 kb on - strand, within OKFHMN_13410at 2576.085 kb on + strand, within OKFHMN_13410at 2576.105 kb on + strand, within OKFHMN_13410at 2576.106 kb on - strand, within OKFHMN_13410at 2576.149 kb on + strand, within OKFHMN_13410at 2576.150 kb on - strand, within OKFHMN_13410at 2576.150 kb on - strand, within OKFHMN_13410at 2576.160 kb on + strand, within OKFHMN_13410at 2576.161 kb on - strand, within OKFHMN_13410at 2576.188 kb on + strand, within OKFHMN_13410at 2576.189 kb on - strand, within OKFHMN_13410at 2576.215 kb on + strand, within OKFHMN_13410at 2576.215 kb on + strand, within OKFHMN_13410at 2576.216 kb on - strand, within OKFHMN_13410at 2576.239 kb on - strand, within OKFHMN_13410at 2576.273 kb on + strand, within OKFHMN_13410at 2576.390 kb on + strandat 2576.391 kb on - strandat 2576.391 kb on - strandat 2576.391 kb on - strandat 2576.391 kb on - strandat 2576.393 kb on + strandat 2576.393 kb on + strandat 2576.422 kb on + strandat 2576.423 kb on - strandat 2576.442 kb on + strandat 2576.445 kb on + strandat 2576.446 kb on - strandat 2576.446 kb on - strandat 2576.455 kb on + strandat 2576.456 kb on - strandat 2576.464 kb on + strandat 2576.470 kb on + strandat 2576.470 kb on + strandat 2576.489 kb on + strandat 2576.526 kb on - strandat 2576.552 kb on - strandat 2576.690 kb on - strandat 2576.690 kb on - strandat 2576.704 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,575,003 - thiH OKFHMN_13400 0.58 -1.7
2,575,007 + thiH OKFHMN_13400 0.58 -0.8
2,575,023 - thiH OKFHMN_13400 0.59 -1.9
2,575,057 + thiH OKFHMN_13400 0.62 -0.5
2,575,057 + thiH OKFHMN_13400 0.62 -0.7
2,575,058 - thiH OKFHMN_13400 0.63 -0.6
2,575,058 - thiH OKFHMN_13400 0.63 -0.1
2,575,059 + thiH OKFHMN_13400 0.63 -0.6
2,575,097 - thiH OKFHMN_13400 0.66 +0.6
2,575,111 + thiH OKFHMN_13400 0.67 -1.1
2,575,144 - thiH OKFHMN_13400 0.70 -0.9
2,575,188 - thiH OKFHMN_13400 0.74 -1.0
2,575,293 + thiH OKFHMN_13400 0.83 -0.2
2,575,294 - thiH OKFHMN_13400 0.83 -0.5
2,575,453 + -0.9
2,575,453 + -1.3
2,575,454 - -0.4
2,575,454 - -1.7
2,575,454 - -2.5
2,575,479 - -0.6
2,575,492 + +0.9
2,575,492 + -0.6
2,575,492 + +0.2
2,575,493 - -1.0
2,575,698 + +1.0
2,575,699 - +0.7
2,575,706 + -0.2
2,575,707 - -1.0
2,575,707 - -0.1
2,575,710 + +0.4
2,575,718 + +0.1
2,575,719 - -0.3
2,575,855 + +0.9
2,575,878 + -0.0
2,575,878 + +0.1
2,575,919 - -1.0
2,576,004 + OKFHMN_13410 0.20 -0.2
2,576,005 - OKFHMN_13410 0.20 +0.0
2,576,026 + OKFHMN_13410 0.25 +0.1
2,576,026 + OKFHMN_13410 0.25 +0.2
2,576,026 + OKFHMN_13410 0.25 -0.1
2,576,026 + OKFHMN_13410 0.25 +0.5
2,576,027 - OKFHMN_13410 0.25 +0.2
2,576,027 - OKFHMN_13410 0.25 -0.2
2,576,027 - OKFHMN_13410 0.25 -0.5
2,576,027 - OKFHMN_13410 0.25 -0.4
2,576,027 - OKFHMN_13410 0.25 +1.2
2,576,027 - OKFHMN_13410 0.25 +1.7
2,576,027 - OKFHMN_13410 0.25 -0.3
2,576,030 + OKFHMN_13410 0.25 +0.2
2,576,030 + OKFHMN_13410 0.25 -0.4
2,576,030 + OKFHMN_13410 0.25 +0.7
2,576,030 + OKFHMN_13410 0.25 +2.6
2,576,030 + OKFHMN_13410 0.25 -0.1
2,576,030 + OKFHMN_13410 0.25 +1.0
2,576,031 - OKFHMN_13410 0.26 +0.4
2,576,085 + OKFHMN_13410 0.38 +0.6
2,576,105 + OKFHMN_13410 0.42 +0.5
2,576,106 - OKFHMN_13410 0.43 -2.7
2,576,149 + OKFHMN_13410 0.52 +0.0
2,576,150 - OKFHMN_13410 0.52 +1.1
2,576,150 - OKFHMN_13410 0.52 -0.0
2,576,160 + OKFHMN_13410 0.55 +0.1
2,576,161 - OKFHMN_13410 0.55 +0.4
2,576,188 + OKFHMN_13410 0.61 +0.5
2,576,189 - OKFHMN_13410 0.61 -2.2
2,576,215 + OKFHMN_13410 0.67 -0.2
2,576,215 + OKFHMN_13410 0.67 -0.0
2,576,216 - OKFHMN_13410 0.67 -1.2
2,576,239 - OKFHMN_13410 0.73 +1.0
2,576,273 + OKFHMN_13410 0.80 +0.3
2,576,390 + +0.0
2,576,391 - +0.4
2,576,391 - +0.2
2,576,391 - -0.6
2,576,391 - -0.2
2,576,393 + +0.5
2,576,393 + +0.1
2,576,422 + -0.2
2,576,423 - +1.5
2,576,442 + +0.5
2,576,445 + -1.5
2,576,446 - +0.7
2,576,446 - -0.2
2,576,455 + +0.6
2,576,456 - -0.1
2,576,464 + +0.1
2,576,470 + -0.2
2,576,470 + +0.2
2,576,489 + +0.7
2,576,526 - +0.4
2,576,552 - -0.6
2,576,690 - -1.0
2,576,690 - -0.7
2,576,704 - +0.4

Or see this region's nucleotide sequence