Strain Fitness in Escherichia coli ECRC100 around OKFHMN_13245

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmetH and iclR are separated by 199 nucleotidesiclR and arpA are separated by 316 nucleotides OKFHMN_13240: metH - methionine synthase, at 2,539,131 to 2,542,814 metH OKFHMN_13245: iclR - glyoxylate bypass operon transcriptional repressor IclR, at 2,543,014 to 2,543,838 iclR OKFHMN_13250: arpA - Ankyrin repeat protein A, at 2,544,155 to 2,546,341 arpA Position (kb) 2543 2544Strain fitness (log2 ratio) -2 -1 0 1at 2542.187 kb on + strand, within metHat 2542.207 kb on - strand, within metHat 2542.305 kb on + strand, within metHat 2542.534 kb on + strandat 2542.641 kb on + strandat 2542.769 kb on + strandat 2542.770 kb on - strandat 2542.770 kb on - strandat 2542.770 kb on - strandat 2542.779 kb on + strandat 2542.960 kb on + strandat 2542.961 kb on - strandat 2543.310 kb on + strand, within iclRat 2543.348 kb on + strand, within iclRat 2543.433 kb on + strand, within iclRat 2543.433 kb on + strand, within iclRat 2543.433 kb on + strand, within iclRat 2543.561 kb on + strand, within iclRat 2543.561 kb on + strand, within iclRat 2543.603 kb on + strand, within iclRat 2543.672 kb on + strand, within iclRat 2543.751 kb on + strand, within iclRat 2543.877 kb on - strandat 2543.998 kb on + strandat 2544.812 kb on - strand, within arpA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,542,187 + metH OKFHMN_13240 0.83 +0.4
2,542,207 - metH OKFHMN_13240 0.83 -0.9
2,542,305 + metH OKFHMN_13240 0.86 +0.2
2,542,534 + -0.1
2,542,641 + +0.6
2,542,769 + +0.3
2,542,770 - -0.2
2,542,770 - -1.8
2,542,770 - +0.1
2,542,779 + -0.6
2,542,960 + -0.1
2,542,961 - -0.1
2,543,310 + iclR OKFHMN_13245 0.36 -0.6
2,543,348 + iclR OKFHMN_13245 0.40 -2.2
2,543,433 + iclR OKFHMN_13245 0.51 -1.2
2,543,433 + iclR OKFHMN_13245 0.51 -1.4
2,543,433 + iclR OKFHMN_13245 0.51 +0.3
2,543,561 + iclR OKFHMN_13245 0.66 -0.6
2,543,561 + iclR OKFHMN_13245 0.66 -0.3
2,543,603 + iclR OKFHMN_13245 0.71 +1.0
2,543,672 + iclR OKFHMN_13245 0.80 -0.9
2,543,751 + iclR OKFHMN_13245 0.89 +1.0
2,543,877 - -0.1
2,543,998 + -0.8
2,544,812 - arpA OKFHMN_13250 0.30 -0.9

Or see this region's nucleotide sequence