Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt adiA and adiY are separated by 323 nucleotides adiY and adiC are separated by 136 nucleotides
OKFHMN_12550: adiA - arginine decarboxylase, at 2,406,664 to 2,408,934
adiA
OKFHMN_12555: adiY - DNA-binding transcriptional activator AdiY, at 2,409,258 to 2,410,019
adiY
OKFHMN_12560: adiC - arginine/agmatine antiporter, at 2,410,156 to 2,411,493
adiC
Position (kb)
2409
2410
2411 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2408.401 kb on - strand, within adiA at 2408.401 kb on - strand, within adiA at 2408.479 kb on + strand, within adiA at 2408.531 kb on - strand, within adiA at 2408.531 kb on - strand, within adiA at 2408.671 kb on + strand, within adiA at 2408.819 kb on + strand at 2408.819 kb on + strand at 2408.824 kb on + strand at 2408.824 kb on + strand at 2408.916 kb on + strand at 2408.917 kb on - strand at 2408.973 kb on + strand at 2409.186 kb on + strand at 2409.258 kb on - strand at 2409.285 kb on - strand at 2409.339 kb on - strand, within adiY at 2409.341 kb on + strand, within adiY at 2409.429 kb on - strand, within adiY at 2409.487 kb on + strand, within adiY at 2409.503 kb on + strand, within adiY at 2409.503 kb on + strand, within adiY at 2409.504 kb on - strand, within adiY at 2409.622 kb on + strand, within adiY at 2409.670 kb on + strand, within adiY at 2409.690 kb on - strand, within adiY at 2410.042 kb on - strand at 2410.079 kb on + strand at 2410.104 kb on - strand at 2410.108 kb on + strand at 2410.116 kb on - strand at 2410.156 kb on - strand at 2410.221 kb on + strand at 2410.285 kb on + strand at 2410.285 kb on + strand at 2410.286 kb on - strand at 2410.332 kb on - strand, within adiC at 2410.375 kb on + strand, within adiC at 2410.486 kb on + strand, within adiC at 2410.487 kb on - strand, within adiC at 2410.490 kb on + strand, within adiC at 2410.491 kb on - strand, within adiC at 2410.491 kb on - strand, within adiC at 2410.495 kb on + strand, within adiC at 2410.527 kb on - strand, within adiC at 2410.687 kb on + strand, within adiC at 2410.687 kb on + strand, within adiC at 2410.688 kb on - strand, within adiC at 2410.688 kb on - strand, within adiC at 2410.688 kb on - strand, within adiC at 2410.741 kb on - strand, within adiC at 2410.833 kb on - strand, within adiC at 2410.870 kb on + strand, within adiC at 2410.870 kb on + strand, within adiC at 2410.871 kb on - strand, within adiC at 2411.015 kb on + strand, within adiC at 2411.016 kb on - strand, within adiC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,408,401 - adiA OKFHMN_12550 0.76 +0.5 2,408,401 - adiA OKFHMN_12550 0.76 +0.0 2,408,479 + adiA OKFHMN_12550 0.80 -0.3 2,408,531 - adiA OKFHMN_12550 0.82 -0.4 2,408,531 - adiA OKFHMN_12550 0.82 -0.6 2,408,671 + adiA OKFHMN_12550 0.88 +0.1 2,408,819 + -0.3 2,408,819 + -0.7 2,408,824 + -0.2 2,408,824 + +0.7 2,408,916 + -0.6 2,408,917 - -0.1 2,408,973 + +0.3 2,409,186 + -0.2 2,409,258 - -1.5 2,409,285 - +0.1 2,409,339 - adiY OKFHMN_12555 0.11 -0.6 2,409,341 + adiY OKFHMN_12555 0.11 +0.0 2,409,429 - adiY OKFHMN_12555 0.22 +1.2 2,409,487 + adiY OKFHMN_12555 0.30 -0.1 2,409,503 + adiY OKFHMN_12555 0.32 +0.8 2,409,503 + adiY OKFHMN_12555 0.32 -0.5 2,409,504 - adiY OKFHMN_12555 0.32 -1.4 2,409,622 + adiY OKFHMN_12555 0.48 -0.5 2,409,670 + adiY OKFHMN_12555 0.54 -1.8 2,409,690 - adiY OKFHMN_12555 0.57 +0.5 2,410,042 - +0.1 2,410,079 + +3.4 2,410,104 - +1.4 2,410,108 + +0.5 2,410,116 - -0.8 2,410,156 - -0.6 2,410,221 + +0.4 2,410,285 + -0.0 2,410,285 + +0.5 2,410,286 - +0.1 2,410,332 - adiC OKFHMN_12560 0.13 +0.1 2,410,375 + adiC OKFHMN_12560 0.16 +0.3 2,410,486 + adiC OKFHMN_12560 0.25 +0.7 2,410,487 - adiC OKFHMN_12560 0.25 +0.4 2,410,490 + adiC OKFHMN_12560 0.25 -0.5 2,410,491 - adiC OKFHMN_12560 0.25 -1.5 2,410,491 - adiC OKFHMN_12560 0.25 -0.6 2,410,495 + adiC OKFHMN_12560 0.25 -1.7 2,410,527 - adiC OKFHMN_12560 0.28 +0.7 2,410,687 + adiC OKFHMN_12560 0.40 +0.0 2,410,687 + adiC OKFHMN_12560 0.40 -0.0 2,410,688 - adiC OKFHMN_12560 0.40 -1.0 2,410,688 - adiC OKFHMN_12560 0.40 +1.9 2,410,688 - adiC OKFHMN_12560 0.40 +0.1 2,410,741 - adiC OKFHMN_12560 0.44 +2.0 2,410,833 - adiC OKFHMN_12560 0.51 -0.4 2,410,870 + adiC OKFHMN_12560 0.53 +0.0 2,410,870 + adiC OKFHMN_12560 0.53 +0.7 2,410,871 - adiC OKFHMN_12560 0.53 -0.3 2,411,015 + adiC OKFHMN_12560 0.64 +0.1 2,411,016 - adiC OKFHMN_12560 0.64 +1.7
Or see this region's nucleotide sequence